RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 HSPB6O14558 160 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 GLIPR1P48060 266 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 GUCA2AQ02747 115 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 ATXN7L3Q14CW9 347 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-217ENST00000555116 TAF9Q16594 264 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 MPV17LQ2QL34 196 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 DEFB112Q30KQ8 113 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 KRTAP24-1Q3LI83 254 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 ZDHHC22Q8N966 263 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 SLC25A28Q96A46 364 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 BANF2Q9H503 90 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 GHRLQ9UBU3 117 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 TMEM127O75204 238 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 OR7C1O76099 320 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-217ENST00000555116 RBP4P02753 201 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 UBBP0CG47 229 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 MGMTP16455 207 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 KRBOX4Q5JUW0 171 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 HES5Q5TA89 166 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 PNKDQ8N490 385 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 SUMF2Q8NBJ7 301 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 LGALS14Q8TCE9 139 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 CORO2AQ92828 525 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 ZNF714Q96N38 554 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 ABHD1Q96SE0 405 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 MMP28Q9H239 520 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 UBE2J1Q9Y385 318 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-217ENST00000555116 V9GY05 133 aa11.61□□□□□ -0.55
SHMT2-217ENST00000555116 hCG_1809904A0A1W2PP81 198 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 A0A1W2PPE2 198 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 A0A1W2PR64 198 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 A0A1W2PRV1 198 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 ODAMA1E959 279 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 NPFFO15130 113 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 HTR2CP28335 458 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 KCNJ3P48549 501 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 UBE2E1P51965 193 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 PAX5Q02548 391 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 PYHIN1Q6K0P9 492 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 OR6M1Q8NGM8 313 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 PLPPR1Q8TBJ4 325 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 Q96M66 194 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 CMTM3Q96MX0 182 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 JMJD8Q96S16 334 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 THAP7Q9BT49 309 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-217ENST00000555116 DPCDQ9BVM2 203 aaPredicted RBP11.6□□□□□ -0.55
SHMT2-217ENST00000555116 NCOR1P1Q9H4R4 102 aa11.6□□□□□ -0.55
SHMT2-217ENST00000555116 RCC2Q9P258 522 aaKnown RBP11.6□□□□□ -0.55
SHMT2-217ENST00000555116 A0A1W2PRD5 423 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 A0A1W2PRF3 423 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 A0A1W2PRM7 423 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 SLC17A2O00624 439 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 LYRM1O43325 122 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 LANCL1O43813 399 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 CRTAPO75718 401 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-217ENST00000555116 VSIG8P0DPA2 414 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 INPP1P49441 399 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 QRFPP83859 136 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 UBE2NLQ5JXB2 153 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 RSBN1Q5VWQ0 802 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-217ENST00000555116 OR10K2Q6IF99 312 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 MZT2BQ6NZ67 158 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 RBMS3Q6XE24 437 aaKnown RBP11.59□□□□□ -0.55
SHMT2-217ENST00000555116 ZNF782Q6ZMW2 699 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-217ENST00000555116 AKAP14Q86UN6 197 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 ENKURQ8TC29 256 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 TRIM63Q969Q1 353 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 SELENOIQ9C0D9 397 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 KCNK15Q9H427 330 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 HEXA-AS1Q9H8Q6 139 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 ING3Q9NXR8 418 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 KIF25Q9UIL4 384 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 TRGV10A0A0A0MS01 117 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 A0A0U1RQK1 487 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A10PA6NDY2 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A18PA6NE21 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A16PA6NEW6 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A20PA6NIJ5 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A8PA6NJQ4 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A7PA6NKC0 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A22PA8MWA6 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A12PA8MX19 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A5PA8MXJ8 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A23PA8MXZ1 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A15PP0C7V4 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A13PP0C7W8 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A14PP0C7W9 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM90A24PP0C7X0 464 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 IGHV1-8P0DP01 117 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 ZNF57Q68EA5 555 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-217ENST00000555116 SIGIRRQ6IA17 410 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 TRAPPC6BQ86SZ2 158 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 DUSP18Q8NEJ0 188 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 TMEM158Q8WZ71 300 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 FAM46BQ96A09 425 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 CST11Q9H112 138 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 TAS2R3Q9NYW6 316 aa11.59□□□□□ -0.55
SHMT2-217ENST00000555116 MEIOCA2RUB1 952 aa11.58□□□□□ -0.56
SHMT2-217ENST00000555116 DNAJC9-AS1A6NH13 148 aa11.58□□□□□ -0.56
SHMT2-217ENST00000555116 RNF212BA8MTL3 300 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms