RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 FER1L5A0AVI2 2057 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 NPIPA2E9PIF3 369 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 NPIPA3F8WFD2 350 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 K7ESF4 209 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 NPBWR2P48146 333 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 SLC10A1Q14973 349 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 RAB35Q15286 201 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 Q6ZPA2 131 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 SLC25A26Q70HW3 274 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 PLPPR1Q8TBJ4 325 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 MBD3L1Q8WWY6 194 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 FGF21Q9NSA1 209 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 P4HTMQ9NXG6 502 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 PPP1R14DQ9NXH3 145 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 GAB2Q9UQC2 676 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 RNF115Q9Y4L5 304 aa11.44□□□□□ -0.58
USP40-214ENST00000483519 IGHV1OR21-1A0A087WYE8 117 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 PIGBOS1A0A0B4J2F0 54 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 SLC33A1O00400 549 aaPredicted RBP11.43□□□□□ -0.58
USP40-214ENST00000483519 DUX1O43812 170 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 CYTIPO60759 359 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 NXPH3O95157 252 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 SNRPCP09234 159 aaKnown RBP11.43□□□□□ -0.58
USP40-214ENST00000483519 CRYGSP22914 178 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 COL10A1Q03692 680 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 ACSF3Q4G176 576 aaPredicted RBP11.43□□□□□ -0.58
USP40-214ENST00000483519 ZNF818PQ6ZRF7 136 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 MRGPRGQ86SM5 289 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 TGIF2LYQ8IUE0 185 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 GAPTQ8N292 157 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 ACY3Q96HD9 319 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 MRPL37Q9BZE1 423 aaKnown RBP11.43□□□□□ -0.58
USP40-214ENST00000483519 ULBP2Q9BZM5 246 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 RPRMQ9NS64 109 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 SHANK1Q9Y566 2161 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 XKRY2A2RUG3 117 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 ZNF705GA8MUZ8 300 aaPredicted RBP11.43□□□□□ -0.58
USP40-214ENST00000483519 OR7C1O76099 320 aaPredicted RBP11.43□□□□□ -0.58
USP40-214ENST00000483519 FUT6P51993 359 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 PAX9P55771 341 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 CLN3Q13286 438 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 TMEM42Q69YG0 159 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 LCN15Q6UWW0 184 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 Q6ZS49 121 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 CADM4Q8NFZ8 388 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 OR5D13Q8NGL4 314 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 NAT6Q93015 286 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 ZNF501Q96CX3 271 aaPredicted RBP11.43□□□□□ -0.58
USP40-214ENST00000483519 TPSD1Q9BZJ3 242 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 OR14J1Q9UGF5 321 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 NAT8Q9UHE5 227 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 ZNF391Q9UJN7 358 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 WASF3Q9UPY6 502 aa11.43□□□□□ -0.58
USP40-214ENST00000483519 LMO7DNF2Z398 122 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 VAMP5O95183 116 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 LCATP04180 440 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 MDKP21741 143 aaPredicted RBP11.42□□□□□ -0.58
USP40-214ENST00000483519 CD38P28907 300 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 FAM27BQ5VT28 67 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 NCR3LG1Q68D85 454 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 MAML2Q8IZL2 1156 aaPredicted RBP11.42□□□□□ -0.58
USP40-214ENST00000483519 ZNF385AQ96PM9 386 aaKnown RBP11.42□□□□□ -0.58
USP40-214ENST00000483519 HIST1H2AAQ96QV6 131 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 RAB40CQ96S21 281 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 PYGO2Q9BRQ0 406 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 PSMG3Q9BT73 122 aaPredicted RBP11.42□□□□□ -0.58
USP40-214ENST00000483519 NCOR1P1Q9H4R4 102 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 MYOTQ9UBF9 498 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 CEBPZOSA8MTT3 80 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 PPP5D1E7EU14 171 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 H0Y980 276 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 SMPD2O60906 423 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 ZFAND5O76080 213 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 HLA-HP01893 362 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 MRPS34P82930 218 aaKnown RBP11.42□□□□□ -0.58
USP40-214ENST00000483519 PDCD1Q15116 288 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 ABLIM2Q6H8Q1 611 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 C17orf78Q8N4C9 275 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 OR5B12Q96R08 314 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 Q9N2K0 584 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 CUL9Q8IWT3 2517 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 KMT2EQ8IZD2 1858 aa11.42□□□□□ -0.58
USP40-214ENST00000483519 IGLV3-12A0A075B6K2 115 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 JMJD7P0C870 316 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 TDGF1P13385 188 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 RPS18P62269 152 aaKnown RBP11.41□□□□□ -0.58
USP40-214ENST00000483519 ADIRFQ15847 76 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 SRSF7Q16629 238 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP40-214ENST00000483519 FADS6Q8N9I5 356 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 TECTBQ96PL2 329 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 AGMATQ9BSE5 352 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 RSG1Q9BU20 258 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 TAAR3PQ9P1P4 343 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 LAMP3Q9UQV4 416 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 PFN1P07737 140 aaKnown RBP11.41□□□□□ -0.58
USP40-214ENST00000483519 SP9P0CG40 484 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 S100GP29377 79 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 FAM3BP58499 235 aaPredicted RBP11.41□□□□□ -0.58
USP40-214ENST00000483519 CFHR1Q03591 330 aa11.41□□□□□ -0.58
USP40-214ENST00000483519 TMEM267Q0VDI3 215 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms