RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CEACAM21Q3KPI0 293 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 ACSF3Q4G176 576 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 PABPC1L2AQ5JQF8 200 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CXorf66Q5JRM2 361 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 LYG2Q86SG7 212 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 ZNF575Q86XF7 245 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 FAM219AQ8IW50 185 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 LRRC18Q8N456 261 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 TOMM5Q8N4H5 51 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 SLC30A7Q8NEW0 376 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 OR52H1Q8NGJ2 320 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 OR13C9Q8NGT0 318 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 OR4K15Q8NH41 348 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 FNDC9Q8TBE3 224 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 ASB13Q8WXK3 278 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 MR1Q95460 341 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 RBMXL1Q96E39 390 aaKnown RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 ZNF799Q96GE5 643 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 COQ2Q96H96 371 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 REEP6Q96HR9 211 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 TMEM56Q96MV1 263 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 AQP10Q96PS8 301 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 TP53RKQ96S44 253 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 NRIP2Q9BQI9 281 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 KLK15Q9H2R5 256 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 DPAGT1Q9H3H5 408 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 BANF2Q9H503 90 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 METTL7AQ9H8H3 244 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 Q9N2K0 584 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 RASL12Q9NYN1 266 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 PTTG3PQ9NZH4 202 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 C19orf25Q9UFG5 118 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 NPIPA1Q9UND3 350 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 TMEM56-RWDD3S4R434 201 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 PKD1P98161 4303 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 NF1P21359 2839 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 HEATR1Q9H583 2144 aaKnown RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 TEX13DA0A0J9YY54 714 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 FAM90A10PA6NDY2 464 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CGB1A6NKQ9 187 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CRTAPO75718 401 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 OR6A2O95222 327 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CRHP06850 196 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 AKAIN1P0CW23 69 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 PGA5P0DJD9 388 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 HKR1P10072 659 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 LIPCP11150 499 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CCL2P13500 99 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 MGMTP16455 207 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 BCL3P20749 454 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 DTYMKP23919 212 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CD82P27701 267 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CFHR2P36980 270 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 DUSP3P51452 185 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 PPIAP62937 165 aaKnown RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 IL24Q13007 206 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 ZMYND11Q15326 602 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 HIKESHIQ53FT3 197 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 METTL11BQ5VVY1 283 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CARD17Q5XLA6 110 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 RUSC1-AS1Q66K80 236 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 SLC25A25Q6KCM7 469 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 KCTD18Q6PI47 426 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 DPPA2Q7Z7J5 298 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 GJC3Q8NFK1 279 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 OR5AP2Q8NGF4 316 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 OR56B1Q8NGI3 324 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 OR5M9Q8NGP3 310 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 FCAMRQ8WWV6 532 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 MOB3AQ96BX8 217 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 SMIM8Q96KF7 97 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 BBC3Q96PG8 261 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 CMKLR1Q99788 373 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 SLCO5A1Q9H2Y9 848 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 PARPBPQ9NWS1 579 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 TREM2Q9NZC2 230 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 KCNN3Q9UGI6 736 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 IKZF2Q9UKS7 526 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 PIGLQ9Y2B2 252 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 TRAV18A0A075B6X5 111 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 A0A1B0GVI7 797 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 SPAARA0A1B0GVQ0 90 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 A0A1B0GW55 424 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 A0A1B0GW64 132 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 A0A1W2PPR1 153 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 STMND1H3BQB6 276 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 H7C1Q1 480 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 DNASE2O00115 360 aaPredicted RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 ADAM20O43506 726 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 TNFSF15O95150 251 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 SFT2D2O95562 160 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 ACTL6AO96019 429 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 TFF1P04155 84 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 HEXAP06865 529 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 KLK3P07288 261 aaPredicted RBP1.9□□□□□ -2.1
VPS54-202ENST00000354504 DUX4L2P0CJ85 424 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 DUX4L3P0CJ86 424 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 DUX4L4P0CJ87 422 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 DUX4L5P0CJ88 424 aa1.9□□□□□ -2.1
VPS54-202ENST00000354504 DUX4L6P0CJ89 424 aa1.9□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms