RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ATP5SQ99766 215 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 ANGPTL4Q9BY76 406 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 Q9N2K0 584 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 FKBP11Q9NYL4 201 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 COPS7AQ9UBW8 275 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 VAX2Q9UIW0 290 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 A0A0G2JRQ6 117 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 BLACEA4D250 179 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 VSTM2BA6NLU5 285 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF705FA8MVS1 300 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 CDS2O95674 445 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF705DP0CH99 300 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF705BP0CI00 300 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 FAM3BP58499 235 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 RAC1P63000 192 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF818PQ6ZRF7 136 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 SDSLQ96GA7 329 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 PRSS50Q9UI38 385 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 CST2P09228 141 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 OR3A1P47881 315 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 CST9LP1Q5W188 147 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 CLEC2AQ6UVW9 174 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 GAPTQ8N292 157 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 OR1N1Q8NGS0 311 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 TMEM18Q96B42 140 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 FBRSQ9HAH7 460 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 MTCH2Q9Y6C9 303 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 B4E171 279 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNHIT1O43257 154 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 S100A7P31151 101 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 ARL16Q0P5N6 197 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 IQCJQ1A5X6 159 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 PPIAL4AQ9Y536 164 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 IGKV1D-13A0A0B4J2D9 117 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 C2CD4DB7Z1M9 353 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 SIAH2O43255 324 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 IGKV1-13P0DP09 117 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 RABEPKQ7Z6M1 372 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 H1FOOQ8IZA3 346 aaPredicted RBP11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF295-AS1Q8N0V1 137 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 ALKBH4Q9NXW9 302 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 ST3GAL6Q9Y274 331 aa11.57□□□□□ -0.56
CCDC88C-201ENST00000331194 ANKUB1A6NFN9 424 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 H7BYZ3 331 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 HSPB6O14558 160 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 METTL15P1P0C7V9 234 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 IAPPP10997 89 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 RPL23P62829 140 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 ID3Q02535 119 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 COA6Q5JTJ3 125 aaKnown RBP11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 TMEM92Q6UXU6 159 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 CCDC71LQ8N9Z2 235 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 OIT3Q8WWZ8 545 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 C22orf15Q8WYQ4 148 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 IL22RA2Q969J5 263 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF837Q96EG3 531 aaPredicted RBP11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 PLK3Q9H4B4 646 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF442Q9H7R0 627 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF286AQ9HBT8 521 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 TAAR3PQ9P1P4 343 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 V9GYS6 101 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 HNF1AP20823 631 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 RBX1P62877 108 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 RAB30Q15771 203 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 BSXQ3C1V8 233 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 C1orf194Q5T5A4 169 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 TDHQ8IZJ6 230 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 OR10G4Q8NGN3 311 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 TMEM170AQ8WVE7 144 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 TBX15Q96SF7 602 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 NBEAQ8NFP9 2946 aa11.56□□□□□ -0.56
CCDC88C-201ENST00000331194 IGHV3-15A0A0B4J1V0 119 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 GRB2P62993 217 aaKnown RBP11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 GAGE1Q13065 139 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 OR5I1Q13606 314 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 TMEM241Q24JQ0 296 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 RNF151Q2KHN1 245 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 RNF115Q9Y4L5 304 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 LRP4O75096 1905 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF737O75373 536 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 HPRT1P00492 218 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 IGLV3-1P01715 115 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 SPINK2P20155 84 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 BMP5P22003 454 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 DTYMKP23919 212 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 PP6455Q8WZ26 134 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 PYGO2Q9BRQ0 406 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 CCL28Q9NRJ3 127 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 NAGKQ9UJ70 344 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 EML6Q6ZMW3 1958 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 TMEM210A6NLX4 147 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 C3orf80F5H4A9 247 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 OR7C1O76099 320 aaPredicted RBP11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 IFNA5P01569 189 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 SCTP09683 121 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 PATE4P0C8F1 98 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 DEFA4P12838 97 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 CHRNA7P36544 502 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 PDLIM4P50479 330 aa11.55□□□□□ -0.56
CCDC88C-201ENST00000331194 NMSQ5H8A3 153 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms