RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CAV2P51636 162 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 ZNF345Q14585 488 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 PRR30Q53SZ7 412 aaPredicted RBP9.72□□□□□ -0.85
CUX1-202ENST00000292538 C22orf34Q6ZV56 151 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 IGHV3-43A0A0B4J1X8 118 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 A0A1B0GV50 99 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 IQCF6A8MYZ5 107 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 B8ZZF3 427 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 CDK2AP1O14519 115 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 IGHV3-43DP0DP04 118 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 TPT1P13693 172 aaKnown RBP9.72□□□□□ -0.85
CUX1-202ENST00000292538 CEACAM6P40199 344 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 IGF2-ASQ6U949 168 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 BAP18Q8IXM2 172 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 BSCL2Q96G97 398 aaPredicted RBP9.72□□□□□ -0.85
CUX1-202ENST00000292538 PKIBQ9C010 78 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 NARFLQ9H6Q4 476 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 TAF9BQ9HBM6 251 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 RCC2Q9P258 522 aaKnown RBP9.72□□□□□ -0.85
CUX1-202ENST00000292538 METRNQ9UJH8 293 aa9.72□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A10PA6NDY2 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A18PA6NE21 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A16PA6NEW6 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A20PA6NIJ5 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A8PA6NJQ4 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A7PA6NKC0 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A22PA8MWA6 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A12PA8MX19 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A5PA8MXJ8 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A23PA8MXZ1 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 GPR31O00270 319 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 ADAM20O43506 726 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 CRYAAP02489 173 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 CRYABP02511 175 aaKnown RBP9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A15PP0C7V4 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A13PP0C7W8 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A14PP0C7W9 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM90A24PP0C7X0 464 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 FAM201AQ5SY85 155 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 C1orf185Q5T7R7 199 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 Q6P435 159 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 SPACA3Q8IXA5 215 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 ZNF808Q8N4W9 903 aaPredicted RBP9.71□□□□□ -0.85
CUX1-202ENST00000292538 Q8NFD4 153 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 MRGPRDQ8TDS7 321 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 MSI2Q96DH6 328 aaKnown RBP9.71□□□□□ -0.85
CUX1-202ENST00000292538 MS4A7Q9GZW8 240 aaPredicted RBP9.71□□□□□ -0.85
CUX1-202ENST00000292538 HRH4Q9H3N8 390 aa9.71□□□□□ -0.85
CUX1-202ENST00000292538 ZNF705EA8MWA4 302 aaPredicted RBP9.71□□□□□ -0.86
CUX1-202ENST00000292538 ATP6V1G2-DDX39BF2Z307 99 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 NUPL2O15504 423 aaKnown RBP9.71□□□□□ -0.86
CUX1-202ENST00000292538 PTBP3O95758 552 aaKnown RBP9.71□□□□□ -0.86
CUX1-202ENST00000292538 CGAP01215 116 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 POLR2GP62487 172 aaKnown RBP eCLIP9.71□□□□□ -0.86
CUX1-202ENST00000292538 P2RY6Q15077 328 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 PRRX2Q99811 253 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 NRIP2Q9BQI9 281 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 DCTN5Q9BTE1 182 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 RSRP1Q9BUV0 290 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 SUCNR1Q9BXA5 334 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 DNTTIP1Q9H147 329 aa9.71□□□□□ -0.86
CUX1-202ENST00000292538 SSSCA1O60232 199 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 SERPINE2P07093 398 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 PGA5P0DJD9 388 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 HKR1P10072 659 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 PMELP40967 661 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 OR3A1P47881 315 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 TMEM33P57088 247 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 NAAAQ02083 359 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 NHLH2Q02577 135 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 CLINT1Q14677 625 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 MSMPQ1L6U9 139 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 SPRNQ5BIV9 151 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 FIP1L1Q6UN15 594 aaKnown RBP9.7□□□□□ -0.86
CUX1-202ENST00000292538 IGFL3Q6UXB1 125 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 GFRALQ6UXV0 394 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 STPG2Q8N412 459 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 DEFB108BQ8NET1 73 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 OR10V1Q8NGI7 309 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 LRRC29Q8WV35 223 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 ERGIC1Q969X5 290 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 TMEM231Q9H6L2 316 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 DECR2Q9NUI1 292 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 TAAR3PQ9P1P4 343 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 DNAJB11Q9UBS4 358 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 MBD3L4A6NDZ8 208 aaPredicted RBP9.7□□□□□ -0.86
CUX1-202ENST00000292538 MBD3L3A6NE82 208 aaPredicted RBP9.7□□□□□ -0.86
CUX1-202ENST00000292538 MBD3L5A6NJ08 208 aaPredicted RBP9.7□□□□□ -0.86
CUX1-202ENST00000292538 DEDDO75618 318 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 APOC3P02656 99 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 HLA-DRB3P79483 266 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 CXorf66Q5JRM2 361 aaPredicted RBP9.7□□□□□ -0.86
CUX1-202ENST00000292538 PCSK4Q6UW60 755 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 LDLRAD3Q86YD5 345 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 WFDC8Q8IUA0 241 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 TMEM217Q8N7C4 229 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 OR1S2Q8NGQ3 325 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 OR1L1Q8NH94 360 aa9.7□□□□□ -0.86
CUX1-202ENST00000292538 MBD3L2Q8NHZ7 208 aaPredicted RBP9.7□□□□□ -0.86
CUX1-202ENST00000292538 CXXC4Q9H2H0 198 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms