RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GNMTQ14749 295 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 SWI5Q1ZZU3 235 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 C11orf1Q9H5F2 150 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 ASCL3Q9NQ33 180 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 ZFP57Q9NU63 452 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 MED19A0JLT2 244 aaPredicted RBP17.04■□□□□ 0.32
VPS53-201ENST00000291074 SSSCA1O60232 199 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 CTXN2P0C2S0 81 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 ZNF324BQ6AW86 544 aaPredicted RBP17.04■□□□□ 0.32
VPS53-201ENST00000291074 OR10Z1Q8NGY1 313 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 PLPPR1Q8TBJ4 325 aa17.04■□□□□ 0.32
VPS53-201ENST00000291074 RIMS4Q9H426 269 aaPredicted RBP17.04■□□□□ 0.32
VPS53-201ENST00000291074 RNASEK-C17orf49H0YIS7 233 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 H0YL77 283 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 CDIPTO14735 213 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 PGLYRP1O75594 196 aaPredicted RBP17.03■□□□□ 0.32
VPS53-201ENST00000291074 UCP1P25874 307 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 CD80P33681 288 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 HOXA4Q00056 320 aaPredicted RBP17.03■□□□□ 0.32
VPS53-201ENST00000291074 SHEQ5VZ18 495 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 ZNF880Q6PDB4 577 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 CBLN2Q8IUK8 224 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 OR10J5Q8NHC4 309 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 GTF3AQ92664 365 aaKnown RBP17.03■□□□□ 0.32
VPS53-201ENST00000291074 ERRFI1Q9UJM3 462 aaPredicted RBP17.03■□□□□ 0.32
VPS53-201ENST00000291074 RFNGQ9Y644 331 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 BORCS7-ASMTA0A0B4J1R7 106 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 IGSF23A1L1A6 192 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 AGFG2O95081 481 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 OMGP23515 440 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 NPBWR1P48145 328 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 F2RL1P55085 397 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 ZNF154Q13106 437 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 CLINT1Q14677 625 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 GABRA6Q16445 453 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 FAM214BQ7L5A3 538 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 OR2C3Q8N628 320 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 OR1J1Q8NGS3 322 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 OR51H1Q8NH63 302 aa17.03■□□□□ 0.32
VPS53-201ENST00000291074 INTS1Q8N201 2190 aaKnown RBP17.02■□□□□ 0.32
VPS53-201ENST00000291074 TRBV6-6A0A0A6YYG2 114 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 OR2H2O95918 312 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 IGHG3P01860 377 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 TGFBR3Q03167 851 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 NMSQ5H8A3 153 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 VWA1Q6PCB0 445 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 CMTM1Q8IZ96 169 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 LINC00518Q8N0U6 118 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 GINS3Q9BRX5 216 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 OR2W1Q9Y3N9 320 aa17.02■□□□□ 0.32
VPS53-201ENST00000291074 LRP5LA4QPB2 252 aa17.02■□□□□ 0.31
VPS53-201ENST00000291074 NDUFA2O43678 99 aa17.02■□□□□ 0.31
VPS53-201ENST00000291074 MPV17P39210 176 aa17.02■□□□□ 0.31
VPS53-201ENST00000291074 ZNF616Q08AN1 781 aa17.02■□□□□ 0.31
VPS53-201ENST00000291074 PSG7Q13046 419 aa17.02■□□□□ 0.31
VPS53-201ENST00000291074 H1FOOQ8IZA3 346 aaPredicted RBP17.02■□□□□ 0.31
VPS53-201ENST00000291074 SEC11CQ9BY50 192 aa17.02■□□□□ 0.31
VPS53-201ENST00000291074 FAM212BQ9NTI7 297 aaPredicted RBP17.02■□□□□ 0.31
VPS53-201ENST00000291074 GRPP07492 148 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 SFTA3P0C7M3 94 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 SPP1P10451 314 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 CD82P27701 267 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 MRPL49Q13405 166 aaKnown RBP17.01■□□□□ 0.31
VPS53-201ENST00000291074 CEBPDP49716 269 aaPredicted RBP17.01■□□□□ 0.31
VPS53-201ENST00000291074 MIDNQ504T8 468 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 FAM76BQ5HYJ3 339 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 C9orf106Q8NAJ2 232 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 CLRN3Q8NCR9 226 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 SPIN2AQ99865 258 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 SPIN2BQ9BPZ2 258 aa17.01■□□□□ 0.31
VPS53-201ENST00000291074 DIDO1Q9BTC0 2240 aaKnown RBP17.01■□□□□ 0.31
VPS53-201ENST00000291074 CACNA1GO43497 2377 aa17■□□□□ 0.31
VPS53-201ENST00000291074 A0A0G2JRQ6 117 aa17■□□□□ 0.31
VPS53-201ENST00000291074 GALR2O43603 387 aaPredicted RBP17■□□□□ 0.31
VPS53-201ENST00000291074 TMEM50AO95807 157 aa17■□□□□ 0.31
VPS53-201ENST00000291074 SEC11BP0C7V7 166 aa17■□□□□ 0.31
VPS53-201ENST00000291074 UCP2P55851 309 aa17■□□□□ 0.31
VPS53-201ENST00000291074 ERVK11-1P61568 191 aa17■□□□□ 0.31
VPS53-201ENST00000291074 Q6ZT83 130 aa17■□□□□ 0.31
VPS53-201ENST00000291074 CABLES2Q9BTV7 478 aa17■□□□□ 0.31
VPS53-201ENST00000291074 IFT22Q9H7X7 185 aa17■□□□□ 0.31
VPS53-201ENST00000291074 PURGQ9UJV8 347 aaKnown RBP17■□□□□ 0.31
VPS53-201ENST00000291074 H0Y980 276 aa17■□□□□ 0.31
VPS53-201ENST00000291074 NXPH2O95156 264 aa17■□□□□ 0.31
VPS53-201ENST00000291074 CD5P06127 495 aa17■□□□□ 0.31
VPS53-201ENST00000291074 DANCRP0C864 163 aa17■□□□□ 0.31
VPS53-201ENST00000291074 EPHA1P21709 976 aa17■□□□□ 0.31
VPS53-201ENST00000291074 F2RP25116 425 aa17■□□□□ 0.31
VPS53-201ENST00000291074 IZUMO4Q1ZYL8 232 aa17■□□□□ 0.31
VPS53-201ENST00000291074 CXorf67Q86X51 503 aaPredicted RBP17■□□□□ 0.31
VPS53-201ENST00000291074 TINAGQ9UJW2 476 aa17■□□□□ 0.31
VPS53-201ENST00000291074 VDAC1P21796 283 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 GUSBP1Q15486 140 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 OR5D13Q8NGL4 314 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 ZNF318Q5VUA4 2279 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 LAMA5O15230 3695 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 PSG2P11465 335 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 KIR2DL2P43627 348 aaPredicted RBP16.99■□□□□ 0.31
VPS53-201ENST00000291074 CAMLGP49069 296 aa16.99■□□□□ 0.31
VPS53-201ENST00000291074 FOXF2Q12947 444 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms