RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 UBE2J1Q9Y385 318 aaPredicted RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 THADAQ6YHU6 1953 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 IGKV1-12A0A0C4DH73 117 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 A0A1W2PNR3 127 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 CLEC18AA5D8T8 446 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 LRRC3CA6NJW4 275 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 PPP5D1E7EU14 171 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 OR2J2O76002 312 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 IGKV1D-12P01611 117 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 RPLP1P05386 114 aaKnown RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 WNT5AP41221 380 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 OR3A1P47881 315 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 NPBWR2P48146 333 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 HERV-K104P61576 105 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 RPL23P62829 140 aaKnown RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 MRPS34P82930 218 aaKnown RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 TMEM267Q0VDI3 215 aaPredicted RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 IL24Q13007 206 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 DAZAP2Q15038 168 aaPredicted RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 NSDHLQ15738 373 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 HIST3H3Q16695 136 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 SNAI3Q3KNW1 292 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 Q6ZSR3 168 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 CYP2G1PQ6ZSU1 146 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 CLEC18CQ8NCF0 446 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 ZDHHC16Q969W1 377 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 ABHD14BQ96IU4 210 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 SMIM7Q9BQ49 75 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 OPN3Q9H1Y3 402 aaPredicted RBP5.85□□□□□ -1.47
VPS39-202ENST00000348544 ZNF286AQ9HBT8 521 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 Q9N2K0 584 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 SOHLH2Q9NX45 425 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 OBP2AQ9NY56 170 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 FKBP11Q9NYL4 201 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 NAT8Q9UHE5 227 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 PRSS50Q9UI38 385 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 PCDH15Q96QU1 1955 aa5.85□□□□□ -1.47
VPS39-202ENST00000348544 A0A0G2JRQ6 117 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 A0A1W2PPQ1 181 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 TP53I11O14683 189 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 NUPR1O60356 82 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 SCGB1D1O95968 90 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 CST2P09228 141 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 IRF2P14316 349 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 SELEP16581 610 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 CCKARP32238 428 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 CAPZBP47756 277 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 IDH3GP51553 393 aaPredicted RBP5.84□□□□□ -1.47
VPS39-202ENST00000348544 FAM3BP58499 235 aaPredicted RBP5.84□□□□□ -1.47
VPS39-202ENST00000348544 YPEL5P62699 121 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 SRPXP78539 464 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 ZNF818PQ6ZRF7 136 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 ZNF573Q86YE8 665 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 POC1BQ8TC44 478 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 MRGPRX1Q96LB2 322 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 P2RX4Q99571 388 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 SPIN2AQ99865 258 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 SPIN2BQ9BPZ2 258 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 AGMATQ9BSE5 352 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 SLC7A10Q9NS82 523 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 PLA2G3Q9NZ20 509 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 MYO15AQ9UKN7 3530 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 IGHV3-20A0A0C4DH32 117 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 CCDC85CA6NKD9 419 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 VSTM2BA6NLU5 285 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 H3BMH7 237 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 H7BYZ3 331 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 HRASP01112 189 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 HNRNPKP61978 463 aaKnown RBP eCLIP5.84□□□□□ -1.47
VPS39-202ENST00000348544 ARL16Q0P5N6 197 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 ENDOGQ14249 297 aaKnown RBP5.84□□□□□ -1.47
VPS39-202ENST00000348544 SHHQ15465 462 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 BSXQ3C1V8 233 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 ARSJQ5FYB0 599 aaPredicted RBP5.84□□□□□ -1.47
VPS39-202ENST00000348544 PHYHD1Q5SRE7 291 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 YAF2Q8IY57 180 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 TMEM256Q8N2U0 113 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 OR2AE1Q8NHA4 323 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 THAP3Q8WTV1 239 aaPredicted RBP5.84□□□□□ -1.47
VPS39-202ENST00000348544 REPIN1Q9BWE0 567 aaKnown RBP5.84□□□□□ -1.47
VPS39-202ENST00000348544 OR6C3Q9NZP0 311 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 COPS7AQ9UBW8 275 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 NAGKQ9UJ70 344 aa5.84□□□□□ -1.47
VPS39-202ENST00000348544 PTRH2Q9Y3E5 179 aaKnown RBP5.84□□□□□ -1.47
VPS39-202ENST00000348544 EXPH5Q8NEV8 1989 aa5.84□□□□□ -1.48
VPS39-202ENST00000348544 IGKV1D-13A0A0B4J2D9 117 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 KIAA1324LA8MWY0 1029 aaPredicted RBP5.83□□□□□ -1.48
VPS39-202ENST00000348544 KBTBD11O94819 623 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 HPRT1P00492 218 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 GNRH1P01148 92 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 CRYABP02511 175 aaKnown RBP5.83□□□□□ -1.48
VPS39-202ENST00000348544 LINC00614P0C842 121 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 IGKV1-13P0DP09 117 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 CD33P20138 364 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 OTX1P32242 354 aaPredicted RBP5.83□□□□□ -1.48
VPS39-202ENST00000348544 TNFRSF4P43489 277 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 IZUMO4Q1ZYL8 232 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 TMEM241Q24JQ0 296 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 TDRG1Q3Y452 100 aa5.83□□□□□ -1.48
VPS39-202ENST00000348544 LCE2DQ5TA82 110 aaPredicted RBP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms