RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 BOKQ9UMX3 212 aaPredicted RBP9.08□□□□□ -0.96
COL3A1-202ENST00000317840 SPTBN5Q9NRC6 3674 aaKnown RBP9.08□□□□□ -0.96
COL3A1-202ENST00000317840 C5orf52A6NGY3 159 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 IAPPP10997 89 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 RBM11P57052 281 aaKnown RBP9.08□□□□□ -0.96
COL3A1-202ENST00000317840 CCL20P78556 96 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 PLP2Q04941 152 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 ZNF239Q16600 458 aaKnown RBP9.08□□□□□ -0.96
COL3A1-202ENST00000317840 ZNF343Q6P1L6 599 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 FADS6Q8N9I5 356 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 TMEM54Q969K7 222 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 RAB39BQ96DA2 213 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 GNPNAT1Q96EK6 184 aaPredicted RBP9.08□□□□□ -0.96
COL3A1-202ENST00000317840 IGLV3-32A0A0A0MS00 114 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 TMEM267Q0VDI3 215 aaPredicted RBP9.08□□□□□ -0.96
COL3A1-202ENST00000317840 COL19A1Q14993 1142 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 PCOLCEQ15113 449 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 C9orf152Q5JTZ5 239 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 CPT1CQ8TCG5 803 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 MSI2Q96DH6 328 aaKnown RBP9.08□□□□□ -0.96
COL3A1-202ENST00000317840 BOD1Q96IK1 185 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 ANGPTL4Q9BY76 406 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 HES7Q9BYE0 225 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 OR2H1Q9GZK4 316 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 IL17BQ9UHF5 180 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 NUP210LQ5VU65 1888 aa9.08□□□□□ -0.96
COL3A1-202ENST00000317840 KIR2DS1A0A191URI9 304 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 CD300LBA8K4G0 201 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 ZNF732B4DXR9 585 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 TERTO14746 1132 aaKnown RBP9.07□□□□□ -0.96
COL3A1-202ENST00000317840 PPP1R2P9O14990 202 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 CDS2O95674 445 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 BCL3P20749 454 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 KIR2DS4P43632 304 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 RND3P61587 244 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 DLK1P80370 383 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 H3F3AP84243 136 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 KIR2DS1Q14954 304 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 IZUMO4Q1ZYL8 232 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 TMPRSS5Q9H3S3 457 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 LRP4O75096 1905 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 IGSF23A1L1A6 192 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 TRDCB7Z8K6 153 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 ATXN7O15265 892 aaPredicted RBP9.07□□□□□ -0.96
COL3A1-202ENST00000317840 ELLP55199 621 aaPredicted RBP9.07□□□□□ -0.96
COL3A1-202ENST00000317840 HGFACQ04756 655 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 TRA2AQ13595 282 aaKnown RBP eCLIP9.07□□□□□ -0.96
COL3A1-202ENST00000317840 NSUN5P2Q63ZY6 315 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 TMEM222Q9H0R3 208 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 FREM1Q5H8C1 2179 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 TRAV39A0A0B4J263 110 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 ETV2O00321 342 aaPredicted RBP9.07□□□□□ -0.96
COL3A1-202ENST00000317840 CLN5O75503 358 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 HBE1P02100 147 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 CST2P09228 141 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 ZIC4Q8N9L1 334 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 OR5T1Q8NG75 326 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 OR10D4PQ8NGN7 298 aa9.07□□□□□ -0.96
COL3A1-202ENST00000317840 GAR1Q9NY12 217 aaKnown RBP9.07□□□□□ -0.96
COL3A1-202ENST00000317840 SYNGR3O43761 229 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 WDR1O75083 606 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 VDAC1P21796 283 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 FGF8P55075 233 aaPredicted RBP9.06□□□□□ -0.96
COL3A1-202ENST00000317840 RPS23P62266 143 aaKnown RBP9.06□□□□□ -0.96
COL3A1-202ENST00000317840 MPV17LQ2QL34 196 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 TMEM211Q6ICI0 200 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 FAM185AQ8N0U4 392 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 OR2V1Q8NHB1 315 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 OR10J5Q8NHC4 309 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 TVP23CQ96ET8 276 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 PLK3Q9H4B4 646 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 METTL1Q9UBP6 276 aaKnown RBP9.06□□□□□ -0.96
COL3A1-202ENST00000317840 PPP1R3CQ9UQK1 317 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 FGF5P12034 268 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 PRDX4Q13162 271 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 SLC23A3Q6PIS1 610 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 BEND4Q6ZU67 534 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 DMBX1Q8NFW5 382 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 SSC4DQ8WTU2 575 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 FOXJ2Q9P0K8 574 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 ERRFI1Q9UJM3 462 aaPredicted RBP9.06□□□□□ -0.96
COL3A1-202ENST00000317840 CEBPZOSA8MTT3 80 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 OTX1P32242 354 aaPredicted RBP9.06□□□□□ -0.96
COL3A1-202ENST00000317840 ARF1P84077 181 aaKnown RBP9.06□□□□□ -0.96
COL3A1-202ENST00000317840 OR1C1Q15619 314 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 CLEC12BQ2HXU8 276 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 ZNF818PQ6ZRF7 136 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 ZNF610Q8N9Z0 462 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 FGFBP3Q8TAT2 258 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 C18orf12Q96KH6 178 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 ZNF488Q96MN9 340 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 SEMA5BQ9P283 1151 aa9.06□□□□□ -0.96
COL3A1-202ENST00000317840 IGHV1-45A0A0A0MS14 117 aa9.05□□□□□ -0.96
COL3A1-202ENST00000317840 FOXI3A8MTJ6 420 aaPredicted RBP9.05□□□□□ -0.96
COL3A1-202ENST00000317840 UBE2CO00762 179 aa9.05□□□□□ -0.96
COL3A1-202ENST00000317840 IGHEP01854 428 aa9.05□□□□□ -0.96
COL3A1-202ENST00000317840 CD63P08962 238 aa9.05□□□□□ -0.96
COL3A1-202ENST00000317840 METTL15P1P0C7V9 234 aa9.05□□□□□ -0.96
COL3A1-202ENST00000317840 SUCLG1P53597 346 aaKnown RBP9.05□□□□□ -0.96
COL3A1-202ENST00000317840 SPANXN5Q5MJ07 72 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms