RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 DUX3Q96PT4 197 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 SPACA5Q96QH8 159 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 PRR25Q96S07 402 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 MYCBPQ99417 103 aaPredicted RBP11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 ABCG5Q9H222 651 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 ZCCHC4Q9H5U6 513 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 FRRS1LQ9P0K9 344 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 MYRFQ9Y2G1 1151 aa11.61□□□□□ -0.55
CCDC88B-201ENST00000301897 NCBP2LA6PVI3 153 aaKnown RBP11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 NPIPB11E5RHQ5 1161 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 H0YJX3 145 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 CCRL2O00421 344 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 HSD17B6O14756 317 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 HTR1AP08908 422 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 ZNF85Q03923 595 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 ATP6AP1Q15904 470 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 UTF1Q5T230 341 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 ELP2Q6IA86 826 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 OR8H1Q8NGG4 311 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 OR5D14Q8NGL3 314 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 OR13A1Q8NGR1 328 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 OR2T10Q8NGZ9 312 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 MUC7Q8TAX7 377 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 LEAP2Q969E1 77 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 MRPL48Q96GC5 212 aaKnown RBP11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 GABARAPL1Q9H0R8 117 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 CHCHD3Q9NX63 227 aaKnown RBP11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 ZNF256Q9Y2P7 627 aaPredicted RBP11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 DNAH7Q8WXX0 4024 aa11.6□□□□□ -0.55
CCDC88B-201ENST00000301897 TENM2Q9NT68 2774 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 HCKP08631 526 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 GNG10P50151 68 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 IL13RA2Q14627 380 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 KISS1Q15726 138 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 MOB3BQ86TA1 216 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 CNIH3Q8TBE1 160 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 C4orf3Q8WVX3 66 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 SLC7A6OSQ96CW6 309 aaPredicted RBP11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 EAF1Q96JC9 268 aaPredicted RBP11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 FAM118AQ9NWS6 357 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 SMAD5-AS1Q9Y6J3 95 aa11.59□□□□□ -0.55
CCDC88B-201ENST00000301897 TRAV24A0A0B4J272 114 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 IGHV1-3A0A0C4DH29 117 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 DAPL1A0PJW8 107 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 HSPB6O14558 160 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 SLC16A6O15403 523 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 SULT1B1O43704 296 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 IGHV3-7P01780 117 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 IGHG4P01861 327 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 OR5H8P0DN80 308 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 GZMHP20718 246 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 IL3RAP26951 378 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 CD1BP29016 333 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 ZP1P60852 638 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 DIAPH2-AS1Q14236 149 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 DEFB136Q30KP8 78 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 CASC10Q5T4H9 136 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 RSBN1Q5VWQ0 802 aaPredicted RBP11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 SERPINA12Q8IW75 414 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 Q8N6K4 173 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 C8orf31Q8N9H6 132 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 PXT1Q8NFP0 134 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 RFESDQ8TAC1 157 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 MRGPRDQ8TDS7 321 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 EME1Q96AY2 570 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 ASCL2Q99929 193 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 RASL11BQ9BPW5 248 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 CHCHD6Q9BRQ6 235 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 SCOCQ9UIL1 159 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 ZNF580Q9UK33 172 aa11.58□□□□□ -0.56
CCDC88B-201ENST00000301897 MOSP00540 346 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 VDAC1P21796 283 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 FASP25445 335 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 POLR2IP36954 125 aaKnown RBP11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 NANOS3P60323 173 aaKnown RBP11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 FHL3Q13643 280 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 LTC4SQ16873 150 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 ZNF260Q3ZCT1 412 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 ZNF691Q5VV52 312 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 LINC00311Q8N616 119 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 Q8N9W7 124 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 OR51A4Q8NGJ6 313 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 OR52M1Q8NGK5 317 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 TRUB1Q8WWH5 349 aaKnown RBP11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 NR1H4Q96RI1 486 aaPredicted RBP11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 CIB1Q99828 191 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 GABARAPL3Q9BY60 117 aa11.57□□□□□ -0.56
CCDC88B-201ENST00000301897 LINC01548A6NM66 108 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 OR4C45A6NMZ5 311 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 MAGEB3O15480 346 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 TXNL1O43396 289 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 OR8U8P0C7N1 319 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 FCGR1AP12314 374 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 SSTR5P35346 364 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 ALKBH1Q13686 389 aaKnown RBP11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 DOC2BQ14184 412 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 RSU1Q15404 277 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 Q3ZCU0 254 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 FAM27D1Q5T7N8 215 aa11.56□□□□□ -0.56
CCDC88B-201ENST00000301897 PARP16Q8N5Y8 322 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms