RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 FRS3O43559 492 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 FAM87AP0C7U9 286 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 CT45A10P0DMU9 189 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 COL10A1Q03692 680 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GAGE5Q13069 117 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GAGE6Q13070 117 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 ELAVL3Q14576 367 aaKnown RBP4.4□□□□□ -1.7
VPS13D-213ENST00000613099 LOXL4Q96JB6 756 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 TUBD1Q9UJT1 453 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 MEF2BQ02080 365 aaPredicted RBP4.4□□□□□ -1.7
VPS13D-213ENST00000613099 INSL6Q9Y581 213 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GAGE12JA6NER3 117 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GAGE7O76087 117 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 HBZP02008 142 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GAGE12FP0CL80 117 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GAGE12GP0CL81 117 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GAGE12IP0CL82 117 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 FUT3P21217 361 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 PSMB2P49721 201 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GAGE4Q13068 117 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 TIMM23BQ5SRD1 257 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 FAM57BQ71RH2 274 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 PRDM13Q9H4Q3 707 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 CTSVO60911 334 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 CTSOP43234 321 aaPredicted RBP4.4□□□□□ -1.7
VPS13D-213ENST00000613099 TMEM225Q6GV28 225 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 SPNS2Q8IVW8 549 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 FAM89BQ8N5H3 189 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GATSQ8NAP1 163 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 SNRNP200O75643 2136 aaKnown RBP4.4□□□□□ -1.7
VPS13D-213ENST00000613099 C8orf89P0DMQ9 161 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 SLC25A6P12236 298 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 FAHP16930 419 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 RBMXL3Q8N7X1 1067 aaKnown RBP4.4□□□□□ -1.7
VPS13D-213ENST00000613099 OR2T6Q8NHC8 308 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 ERGIC1Q969X5 290 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 GABRG3Q99928 467 aa4.4□□□□□ -1.7
VPS13D-213ENST00000613099 KCNE1BA0A087WTH5 132 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 TMEM189A5PLL7 270 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 J3QW42 95 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 SMIM17P0DL12 118 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 PIANPQ8IYJ0 282 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 EGLN1Q9GZT9 426 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 SLC2A10O95528 541 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 CCR5P51681 352 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 SHBQ15464 509 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 MED25Q71SY5 747 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 OR4A16Q8NH70 328 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 KLHDC3Q9BQ90 382 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 OR5B21A6NL26 309 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 S1PR2O95136 353 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 RBPJQ06330 500 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 CMTM8Q8IZV2 173 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 DOCK8Q8NF50 2099 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 CXCL14O95715 111 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 HLA-GP17693 338 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 TFPI2P48307 235 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 VAX1Q5SQQ9 334 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 TEX38Q6PEX7 206 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 SIRT6Q8N6T7 355 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 OR4D5Q8NGN0 318 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 Q8WTZ3 238 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 PLA2G12AQ9BZM1 189 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 MRPL17Q9NRX2 175 aaKnown RBP4.4□□□□□ -1.71
VPS13D-213ENST00000613099 SLCO1C1Q9NYB5 712 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 LAIR2Q6ISS4 152 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 VSTM2AQ8TAG5 236 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 RCC1LQ96I51 464 aaKnown RBP4.4□□□□□ -1.71
VPS13D-213ENST00000613099 LINC01549A6NIU2 74 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 CA1P00915 261 aaPredicted RBP4.4□□□□□ -1.71
VPS13D-213ENST00000613099 KLK2P20151 261 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 TBPL1P62380 186 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 BTG2P78543 158 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 TCTN1Q2MV58 587 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 TMEM176BQ3YBM2 270 aaPredicted RBP4.4□□□□□ -1.71
VPS13D-213ENST00000613099 FAM71E1Q6IPT2 247 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 TMEM64Q6YI46 380 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 FER1L6-AS1Q8NA97 138 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 OR4P4Q8NGL7 312 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 DOK3Q7L591 496 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 GPX7Q96SL4 187 aaPredicted RBP4.4□□□□□ -1.71
VPS13D-213ENST00000613099 TMEM147Q9BVK8 224 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 CD84Q9UIB8 345 aa4.4□□□□□ -1.71
VPS13D-213ENST00000613099 ADAM20O43506 726 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 GHRHP01286 108 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 VSIG4Q9Y279 399 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 R4GMQ9 66 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 A0A1B0GU03 582 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 H0YL77 283 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 FCGR3AP08637 254 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 PI3P19957 117 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 FNDC4Q9H6D8 234 aaPredicted RBP4.39□□□□□ -1.71
VPS13D-213ENST00000613099 ZNF106Q9H2Y7 1883 aaKnown RBP4.39□□□□□ -1.71
VPS13D-213ENST00000613099 AMY1AP04745 511 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 SLURP2P0DP57 97 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 CD22P20273 847 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 CATR1Q13166 79 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 SRSF9Q13242 221 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS13D-213ENST00000613099 FDX2Q6P4F2 183 aa4.39□□□□□ -1.71
VPS13D-213ENST00000613099 CTU1Q7Z7A3 348 aaKnown RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms