RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 FAUP35544 74 aaKnown RBP12.12□□□□□ -0.47
SHMT2-208ENST00000553868 CCL8P80075 99 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 RBM39Q14498 530 aaKnown RBP12.12□□□□□ -0.47
SHMT2-208ENST00000553868 ZNF146Q15072 292 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 CYB5R2Q6BCY4 276 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 ACP7Q6ZNF0 438 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 TRAPPC6BQ86SZ2 158 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 ST8SIA4Q92187 359 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 RAB1BQ9H0U4 201 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 SEBOXQ9HB31 216 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-208ENST00000553868 GCM1Q9NP62 436 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 RCC2Q9P258 522 aaKnown RBP12.12□□□□□ -0.47
SHMT2-208ENST00000553868 DNAJB11Q9UBS4 358 aa12.12□□□□□ -0.47
SHMT2-208ENST00000553868 TCF21O43680 179 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 ORC5O43913 435 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 PTTG1O95997 202 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 DANCRP0C864 163 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 PTHLHP12272 177 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 ZNF44P15621 663 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 DYRK1AQ13627 763 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 SIGIRRQ6IA17 410 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 C6orf201Q7Z4U5 140 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 DTX2Q86UW9 622 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 NEK7Q8TDX7 302 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 GCDHQ92947 438 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-208ENST00000553868 CMYA5Q8N3K9 4069 aa12.11□□□□□ -0.47
SHMT2-208ENST00000553868 LINC00854A0A1B0GVQ3 168 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 ANKRD20A5PA0PJZ0 165 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 MEIOCA2RUB1 952 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 NAP1L6A6NFF2 107 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 LANCL1O43813 399 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 HAND1O96004 215 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 TAS2R19P59542 299 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 GMFBP60983 142 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 GUCA2AQ02747 115 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 TRIM16LQ309B1 348 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 GCSAMQ8N6F7 178 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 C3orf56Q8N813 242 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 NUDCD2Q8WVJ2 157 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 VRK1Q99986 396 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-208ENST00000553868 CMSS1Q9BQ75 279 aaKnown RBP12.1□□□□□ -0.47
SHMT2-208ENST00000553868 OCSTAMPQ9BR26 566 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 FAAP24Q9BTP7 215 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 CHST6Q9GZX3 395 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 RIMS4Q9H426 269 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-208ENST00000553868 C12orf4Q9NQ89 552 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 NLKQ9UBE8 527 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 IL36RNQ9UBH0 155 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 KLK11Q9UBX7 282 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 KCNK7Q9Y2U2 307 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 WIPI2Q9Y4P8 454 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 CACNG2Q9Y698 323 aa12.1□□□□□ -0.47
SHMT2-208ENST00000553868 POM121CA8CG34 1229 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 WNT9BO14905 357 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 LYRM1O43325 122 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 LHBP01229 141 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 TBPP20226 339 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 DTYMKP23919 212 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 DUSP1P28562 367 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 MDH2P40926 338 aaKnown RBP12.09□□□□□ -0.47
SHMT2-208ENST00000553868 LOXL1Q08397 574 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-208ENST00000553868 KLF9Q13886 244 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-208ENST00000553868 ACTBL2Q562R1 376 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 PAN3Q58A45 887 aaKnown RBP12.09□□□□□ -0.47
SHMT2-208ENST00000553868 C11orf71Q6IPW1 123 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 Q6P435 159 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 BOLLQ8N9W6 283 aaKnown RBP12.09□□□□□ -0.47
SHMT2-208ENST00000553868 TMEM229BQ8NBD8 167 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 PPP1R35Q8TAP8 253 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 NEU4Q8WWR8 484 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-208ENST00000553868 SULT4A1Q9BR01 284 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 TRAF4Q9BUZ4 470 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-208ENST00000553868 OR14J1Q9UGF5 321 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 AK3Q9UIJ7 227 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 TBC1D24Q9ULP9 559 aa12.09□□□□□ -0.47
SHMT2-208ENST00000553868 IGHV1-69-2A0A0G2JMI3 117 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 UBE2QL1A1L167 161 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 ZNF736B4DX44 427 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-208ENST00000553868 PLA2G10O15496 165 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 SSX5O60225 188 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 OR2H2O95918 312 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 AKAIN1P0CW23 69 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 MUC1P15941 1255 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-208ENST00000553868 LMO1P25800 156 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 KCNJ3P48549 501 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 PDCD1Q15116 288 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 MICBQ29980 383 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 HFEQ30201 348 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 MIDNQ504T8 468 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 SPRNQ5BIV9 151 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 ZCCHC24Q8N2G6 241 aaKnown RBP12.08□□□□□ -0.48
SHMT2-208ENST00000553868 SUMF2Q8NBJ7 301 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 ENKURQ8TC29 256 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 CHPT1Q8WUD6 406 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 DPCDQ9BVM2 203 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-208ENST00000553868 WDR13Q9H1Z4 485 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 CHMP1AQ9HD42 196 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-208ENST00000553868 TMEM106BQ9NUM4 274 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 TREM2Q9NZC2 230 aa12.08□□□□□ -0.48
SHMT2-208ENST00000553868 ELF5Q9UKW6 265 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms