RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 TERB2Q8NHR7 220 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 MARCH1Q8TCQ1 289 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 CAPSLQ8WWF8 208 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 TMEM165Q9HC07 324 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 NECAP2Q9NVZ3 263 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ING3Q9NXR8 418 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 CISD1Q9NZ45 108 aaKnown RBP11.81□□□□□ -0.52
GPNMB-203ENST00000409458 TREM2Q9NZC2 230 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 GLS2Q9UI32 602 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 CFAP46Q8IYW2 2715 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ICE1Q9Y2F5 2266 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 OR5H14A6NHG9 310 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 B8ZZF3 427 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF205O95201 554 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 OR5H8P0DN80 308 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 PSG2P11465 335 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 CD80P33681 288 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 COL10A1Q03692 680 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 GRK1Q15835 563 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 SRSF7Q16629 238 aaKnown RBP eCLIP11.81□□□□□ -0.52
GPNMB-203ENST00000409458 FAM201AQ5SY85 155 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF626Q68DY1 528 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF660Q6AZW8 331 aaPredicted RBP11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF880Q6PDB4 577 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF497Q6ZNH5 498 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 TMEM17Q86X19 198 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 Q8TCH9 128 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ST6GAL2Q96JF0 529 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 DHRS9Q9BPW9 319 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 MED28Q9H204 178 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 LIME1Q9H400 295 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 RIMS4Q9H426 269 aaPredicted RBP11.81□□□□□ -0.52
GPNMB-203ENST00000409458 DYNLRB1Q9NP97 96 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 DNAJB11Q9UBS4 358 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 WIPI2Q9Y4P8 454 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 NPTNQ9Y639 398 aa11.81□□□□□ -0.52
GPNMB-203ENST00000409458 ANKHD1Q8IWZ3 2542 aaKnown RBP11.8□□□□□ -0.52
GPNMB-203ENST00000409458 IGKV1D-17A0A075B6S4 117 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 C19orf84I3L1E1 186 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 CYB5R3P00387 301 aaPredicted RBP11.8□□□□□ -0.52
GPNMB-203ENST00000409458 CD83Q01151 205 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 TESK1Q15569 626 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 FAM90A1Q86YD7 464 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 ERGIC1Q969X5 290 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF2Q9BSG1 426 aaPredicted RBP11.8□□□□□ -0.52
GPNMB-203ENST00000409458 DCAF16Q9NXF7 216 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 RNF7Q9UBF6 113 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF69Q9UC07 566 aa11.8□□□□□ -0.52
GPNMB-203ENST00000409458 RAI1Q7Z5J4 1906 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 DYSFO75923 2080 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 CEACAM18A8MTB9 384 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 TRDCB7Z8K6 153 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 B9A039 149 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 IFNL4K9M1U5 179 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 SSNA1O43805 119 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 CREBL2O60519 120 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 SCTP09683 121 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 RCC1P18754 421 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 TNFRSF1AP19438 455 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 FPR2P25090 351 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 OR3A1P47881 315 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 BAMBIQ13145 260 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 IGSF11Q5DX21 431 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 FAM209AQ5JX71 171 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 CD276Q5ZPR3 534 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 PEG10Q86TG7 708 aaKnown RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 GAPTQ8N292 157 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 ADAD2Q8NCV1 583 aaKnown RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 OR11H7Q8NGC8 314 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 OR11L1Q8NGX0 322 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 MED30Q96HR3 178 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 TMPRSS13Q9BYE2 586 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 FXYD6Q9H0Q3 95 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 ALX4Q9H161 411 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 SAP30LQ9HAJ7 183 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 GPN1Q9HCN4 374 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 RANGRFQ9HD47 186 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 MYOZ1Q9NP98 299 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-203ENST00000409458 PPP1R3CQ9UQK1 317 aa11.79□□□□□ -0.52
GPNMB-203ENST00000409458 TRAV39A0A0B4J263 110 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 SNRPGP15A8MWD9 76 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 FABP7O15540 132 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 C1QL1O75973 258 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 OR4E1P0C645 316 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 PRDX2P32119 198 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 HLA-DRB3P79483 266 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 HERPUD1Q15011 391 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 SWI5Q1ZZU3 235 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 C4orf46Q504U0 113 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 SLC25A42Q86VD7 318 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 MUC15Q8N387 334 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF843Q8N446 348 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 CCDC107Q8WV48 283 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 COQ2Q96H96 371 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 FYTTD1Q96QD9 318 aaKnown RBP11.78□□□□□ -0.52
GPNMB-203ENST00000409458 C5orf66Q9H5L9 145 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 DECR2Q9NUI1 292 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 ZNF222Q9UK12 451 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 GPR132Q9UNW8 380 aa11.78□□□□□ -0.52
GPNMB-203ENST00000409458 TANC2Q9HCD6 1990 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms