RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 CRELD1Q96HD1 420 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 LATS2Q9NRM7 1088 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 SAMM50Q9Y512 469 aa5.52□□□□□ -1.53
CSMD3-210ENST00000534172 AFF1P51825 1210 aaKnown RBP5.51□□□□□ -1.53
CSMD3-210ENST00000534172 PIP4K2BP78356 416 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 PPP2R3AQ06190 1150 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 DIEXFQ68CQ4 756 aaKnown RBP5.51□□□□□ -1.53
CSMD3-210ENST00000534172 WHAMMQ8TF30 809 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 H3BRJ5 948 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 IRS1P35568 1242 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 DGKGP49619 791 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 MRPL58Q14197 206 aaKnown RBP5.51□□□□□ -1.53
CSMD3-210ENST00000534172 HP1BP3Q5SSJ5 553 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-210ENST00000534172 NXPE4Q6UWF7 544 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 SV2BQ7L1I2 683 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 GLIS3Q8NEA6 775 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 ASAP3Q8TDY4 903 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 CLEC4MQ9H2X3 399 aaPredicted RBP5.51□□□□□ -1.53
CSMD3-210ENST00000534172 ABCB6Q9NP58 842 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 IGSF5Q9NSI5 407 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 SOX13Q9UN79 622 aa5.51□□□□□ -1.53
CSMD3-210ENST00000534172 RNF225M0QZC1 329 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-210ENST00000534172 GRIK5Q16478 980 aa5.5□□□□□ -1.53
CSMD3-210ENST00000534172 GDF6Q6KF10 455 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-210ENST00000534172 KLHL23Q8NBE8 558 aa5.5□□□□□ -1.53
CSMD3-210ENST00000534172 MRRFQ96E11 262 aaKnown RBP5.5□□□□□ -1.53
CSMD3-210ENST00000534172 METTL5Q9NRN9 209 aaKnown RBP5.5□□□□□ -1.53
CSMD3-210ENST00000534172 USP17L7P0C7H9 530 aa5.5□□□□□ -1.53
CSMD3-210ENST00000534172 FCGRTP55899 365 aa5.5□□□□□ -1.53
CSMD3-210ENST00000534172 PRRT3Q5FWE3 981 aa5.5□□□□□ -1.53
CSMD3-210ENST00000534172 SETDB2Q96T68 719 aa5.5□□□□□ -1.53
CSMD3-210ENST00000534172 OSBPL7Q9BZF2 842 aa5.5□□□□□ -1.53
CSMD3-210ENST00000534172 KIAA1522Q9P206 1035 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-210ENST00000534172 TRIM33Q9UPN9 1127 aa5.5□□□□□ -1.53
CSMD3-210ENST00000534172 IKBKEQ14164 716 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 TAF1CQ15572 869 aaPredicted RBP5.49□□□□□ -1.53
CSMD3-210ENST00000534172 SCARA3Q6AZY7 606 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 ZNF576Q9H609 170 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 NID1P14543 1247 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 PCDH1Q08174 1060 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 TRIM28Q13263 835 aaKnown RBP5.49□□□□□ -1.53
CSMD3-210ENST00000534172 TRAPPC3LQ5T215 181 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 EMILIN2Q9BXX0 1053 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 LACRTQ9GZZ8 138 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 USP35Q9P2H5 1018 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 STK17AQ9UEE5 414 aa5.49□□□□□ -1.53
CSMD3-210ENST00000534172 USP31Q70CQ4 1352 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 ACPPP15309 386 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 AP3B2Q13367 1082 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 PWP1Q13610 501 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 PI16Q6UXB8 463 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 LINC00114Q6XXX2 140 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 NOC4LQ9BVI4 516 aaKnown RBP5.48□□□□□ -1.53
CSMD3-210ENST00000534172 SEC31BQ9NQW1 1179 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 ADAMTS8Q9UP79 889 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 AKAP2Q9Y2D5 859 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 GRIA4P48058 902 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 C19orf57Q0VDD7 668 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 NACC1Q96RE7 527 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-210ENST00000534172 UNC13AQ9UPW8 1703 aa5.48□□□□□ -1.53
CSMD3-210ENST00000534172 SCAMP3O14828 347 aaKnown RBP5.47□□□□□ -1.53
CSMD3-210ENST00000534172 B3GALT4O96024 378 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 TAGLNQ01995 201 aaKnown RBP5.47□□□□□ -1.53
CSMD3-210ENST00000534172 SUZ12Q15022 739 aaKnown RBP5.47□□□□□ -1.53
CSMD3-210ENST00000534172 ILDR2Q71H61 639 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 FBXO11Q86XK2 927 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 TMEM39AQ9NV64 488 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 TTF2Q9UNY4 1162 aaKnown RBP5.47□□□□□ -1.53
CSMD3-210ENST00000534172 BAG6P46379 1132 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 LRRC14Q15048 493 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 SPRED3Q2MJR0 410 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 VN1R5Q7Z5H4 357 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 TMEM87AQ8NBN3 555 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 C3orf58Q8NDZ4 430 aa5.47□□□□□ -1.53
CSMD3-210ENST00000534172 CYP11A1P05108 521 aa5.46□□□□□ -1.54
CSMD3-210ENST00000534172 ESRRAP11474 423 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-210ENST00000534172 DMRTC2Q8IXT2 367 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-210ENST00000534172 FSCN2O14926 492 aa5.46□□□□□ -1.54
CSMD3-210ENST00000534172 TRPA1O75762 1119 aa5.46□□□□□ -1.54
CSMD3-210ENST00000534172 HOXB4P17483 251 aaPredicted RBP5.46□□□□□ -1.54
CSMD3-210ENST00000534172 HHIPQ96QV1 700 aa5.46□□□□□ -1.54
CSMD3-210ENST00000534172 PLVAPQ9BX97 442 aa5.46□□□□□ -1.54
CSMD3-210ENST00000534172 LINC01387J3KSC0 135 aa5.45□□□□□ -1.54
CSMD3-210ENST00000534172 COL9A3Q14050 684 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-210ENST00000534172 SH2B1Q9NRF2 756 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-210ENST00000534172 GPN3Q9UHW5 284 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-210ENST00000534172 A0A0A0MRY4 1105 aa5.45□□□□□ -1.54
CSMD3-210ENST00000534172 SPATA31C1P0DKV0 1188 aa5.45□□□□□ -1.54
CSMD3-210ENST00000534172 ELNP15502 786 aa5.45□□□□□ -1.54
CSMD3-210ENST00000534172 EPHA1P21709 976 aa5.45□□□□□ -1.54
CSMD3-210ENST00000534172 LORP23490 312 aaPredicted RBP5.45□□□□□ -1.54
CSMD3-210ENST00000534172 RPS26P62854 115 aaKnown RBP5.45□□□□□ -1.54
CSMD3-210ENST00000534172 C8orf86Q6ZUL3 223 aa5.45□□□□□ -1.54
CSMD3-210ENST00000534172 APBA3O96018 575 aa5.44□□□□□ -1.54
CSMD3-210ENST00000534172 NME2P22392 152 aa5.44□□□□□ -1.54
CSMD3-210ENST00000534172 TSNAXIP1Q2TAA8 658 aa5.44□□□□□ -1.54
CSMD3-210ENST00000534172 RELL1Q8IUW5 271 aa5.44□□□□□ -1.54
CSMD3-210ENST00000534172 FMR1NBQ8N0W7 255 aaPredicted RBP5.44□□□□□ -1.54
CSMD3-210ENST00000534172 RNF34Q969K3 372 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms