RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 SASH1O94885 1247 aa19.67■□□□□ 0.74
HDAC4-213ENST00000496347 PDE8BO95263 885 aa19.67■□□□□ 0.74
HDAC4-213ENST00000496347 FKBP1BP68106 108 aa19.67■□□□□ 0.74
HDAC4-213ENST00000496347 GRM1Q13255 1194 aa19.67■□□□□ 0.74
HDAC4-213ENST00000496347 LRRC24Q50LG9 513 aa19.67■□□□□ 0.74
HDAC4-213ENST00000496347 COL13A1Q5TAT6 717 aaPredicted RBP19.67■□□□□ 0.74
HDAC4-213ENST00000496347 INTS3Q68E01 1043 aaKnown RBP19.67■□□□□ 0.74
HDAC4-213ENST00000496347 DLK2Q6UY11 383 aa19.67■□□□□ 0.74
HDAC4-213ENST00000496347 APOBEC3FQ8IUX4 373 aaKnown RBP19.67■□□□□ 0.74
HDAC4-213ENST00000496347 ZBED3Q96IU2 234 aaPredicted RBP19.67■□□□□ 0.74
HDAC4-213ENST00000496347 FBXO3Q9UK99 471 aa19.67■□□□□ 0.74
HDAC4-213ENST00000496347 HIBADHP31937 336 aaKnown RBP19.66■□□□□ 0.74
HDAC4-213ENST00000496347 RFX5P48382 616 aaPredicted RBP19.66■□□□□ 0.74
HDAC4-213ENST00000496347 NOGQ13253 232 aa19.66■□□□□ 0.74
HDAC4-213ENST00000496347 PUM3Q15397 648 aaKnown RBP19.66■□□□□ 0.74
HDAC4-213ENST00000496347 MTMR14Q8NCE2 650 aa19.66■□□□□ 0.74
HDAC4-213ENST00000496347 TDRD7Q8NHU6 1098 aaKnown RBP19.66■□□□□ 0.74
HDAC4-213ENST00000496347 ZBED9Q6R2W3 1325 aa19.66■□□□□ 0.74
HDAC4-213ENST00000496347 EYA2O00167 538 aa19.65■□□□□ 0.74
HDAC4-213ENST00000496347 GYG1P46976 350 aa19.65■□□□□ 0.74
HDAC4-213ENST00000496347 VPS37DQ86XT2 251 aa19.65■□□□□ 0.74
HDAC4-213ENST00000496347 KLHDC4Q8TBB5 520 aa19.65■□□□□ 0.74
HDAC4-213ENST00000496347 BEGAINQ9BUH8 593 aa19.65■□□□□ 0.74
HDAC4-213ENST00000496347 PRDM10Q9NQV6 1147 aa19.65■□□□□ 0.74
HDAC4-213ENST00000496347 TRIM27P14373 513 aa19.64■□□□□ 0.73
HDAC4-213ENST00000496347 PTPN12Q05209 780 aaKnown RBP19.64■□□□□ 0.73
HDAC4-213ENST00000496347 DLGAP5Q15398 846 aa19.64■□□□□ 0.73
HDAC4-213ENST00000496347 CAVIN4Q5BKX8 364 aa19.64■□□□□ 0.73
HDAC4-213ENST00000496347 MFSD14BQ5SR56 506 aa19.64■□□□□ 0.73
HDAC4-213ENST00000496347 RGMBQ6NW40 437 aa19.64■□□□□ 0.73
HDAC4-213ENST00000496347 ATF7IPQ6VMQ6 1270 aa19.64■□□□□ 0.73
HDAC4-213ENST00000496347 FAM84BQ96KN1 310 aaPredicted RBP19.64■□□□□ 0.73
HDAC4-213ENST00000496347 MEIS3Q99687 375 aa19.64■□□□□ 0.73
HDAC4-213ENST00000496347 LRRFIP2Q9Y608 721 aaKnown RBP19.64■□□□□ 0.73
HDAC4-213ENST00000496347 CA12O43570 354 aa19.63■□□□□ 0.73
HDAC4-213ENST00000496347 CIAO1O76071 339 aa19.63■□□□□ 0.73
HDAC4-213ENST00000496347 GNAI3P08754 354 aa19.63■□□□□ 0.73
HDAC4-213ENST00000496347 FBXO33Q7Z6M2 555 aa19.63■□□□□ 0.73
HDAC4-213ENST00000496347 SPDYE2BA6NHP3 402 aa19.62■□□□□ 0.73
HDAC4-213ENST00000496347 MYO1BO43795 1136 aa19.62■□□□□ 0.73
HDAC4-213ENST00000496347 AOC2O75106 756 aa19.62■□□□□ 0.73
HDAC4-213ENST00000496347 IFIT1P09914 478 aaKnown RBP19.62■□□□□ 0.73
HDAC4-213ENST00000496347 SPDYE6P0CI01 402 aa19.62■□□□□ 0.73
HDAC4-213ENST00000496347 CCDC102AQ96A19 550 aa19.62■□□□□ 0.73
HDAC4-213ENST00000496347 JAG2Q9Y219 1238 aa19.62■□□□□ 0.73
HDAC4-213ENST00000496347 FGFR2P21802 821 aa19.61■□□□□ 0.73
HDAC4-213ENST00000496347 NF2P35240 595 aa19.61■□□□□ 0.73
HDAC4-213ENST00000496347 TNS4Q8IZW8 715 aa19.61■□□□□ 0.73
HDAC4-213ENST00000496347 TBC1D22AQ8WUA7 517 aa19.61■□□□□ 0.73
HDAC4-213ENST00000496347 AKAP11Q9UKA4 1901 aa19.61■□□□□ 0.73
HDAC4-213ENST00000496347 FAM155AB1AL88 458 aaPredicted RBP19.6■□□□□ 0.73
HDAC4-213ENST00000496347 F8W031 263 aaPredicted RBP19.6■□□□□ 0.73
HDAC4-213ENST00000496347 SLC10A3P09131 477 aa19.6■□□□□ 0.73
HDAC4-213ENST00000496347 HSPA8P11142 646 aaKnown RBP19.6■□□□□ 0.73
HDAC4-213ENST00000496347 SLC5A1P13866 664 aa19.6■□□□□ 0.73
HDAC4-213ENST00000496347 CFAP100Q494V2 611 aa19.6■□□□□ 0.73
HDAC4-213ENST00000496347 ATG9AQ7Z3C6 839 aa19.6■□□□□ 0.73
HDAC4-213ENST00000496347 LPIN2Q92539 896 aa19.6■□□□□ 0.73
HDAC4-213ENST00000496347 SERPINA10Q9UK55 444 aa19.6■□□□□ 0.73
HDAC4-213ENST00000496347 PPP2R3BQ9Y5P8 575 aa19.6■□□□□ 0.73
HDAC4-213ENST00000496347 BCAR3O75815 825 aa19.59■□□□□ 0.73
HDAC4-213ENST00000496347 ZNF157P51786 506 aaPredicted RBP19.59■□□□□ 0.73
HDAC4-213ENST00000496347 MTX1Q13505 466 aa19.59■□□□□ 0.73
HDAC4-213ENST00000496347 FRAT1Q92837 279 aaPredicted RBP19.59■□□□□ 0.73
HDAC4-213ENST00000496347 COPRSQ9NQ92 184 aa19.59■□□□□ 0.73
HDAC4-213ENST00000496347 TTF2Q9UNY4 1162 aaKnown RBP19.59■□□□□ 0.73
HDAC4-213ENST00000496347 LAMB1P07942 1786 aa19.58■□□□□ 0.73
HDAC4-213ENST00000496347 IL15P40933 162 aaPredicted RBP19.58■□□□□ 0.72
HDAC4-213ENST00000496347 LBX1P52954 281 aa19.58■□□□□ 0.72
HDAC4-213ENST00000496347 ZKSCAN2Q63HK3 967 aa19.58■□□□□ 0.72
HDAC4-213ENST00000496347 SIL1Q9H173 461 aa19.58■□□□□ 0.72
HDAC4-213ENST00000496347 SCAF8Q9UPN6 1271 aaKnown RBP19.58■□□□□ 0.72
HDAC4-213ENST00000496347 FRAT2O75474 233 aaPredicted RBP19.57■□□□□ 0.72
HDAC4-213ENST00000496347 DEFB129Q9H1M3 183 aa19.57■□□□□ 0.72
HDAC4-213ENST00000496347 SUGT1Q9Y2Z0 365 aa19.57■□□□□ 0.72
HDAC4-213ENST00000496347 SSC5DA1L4H1 1573 aa19.57■□□□□ 0.72
HDAC4-213ENST00000496347 MAST3O60307 1309 aa19.56■□□□□ 0.72
HDAC4-213ENST00000496347 BCAMP50895 628 aa19.56■□□□□ 0.72
HDAC4-213ENST00000496347 RBM5P52756 815 aaKnown RBP eCLIP19.56■□□□□ 0.72
HDAC4-213ENST00000496347 TNFAIP1Q13829 316 aa19.56■□□□□ 0.72
HDAC4-213ENST00000496347 ATP2B3Q16720 1220 aa19.56■□□□□ 0.72
HDAC4-213ENST00000496347 RASAL3Q86YV0 1011 aa19.56■□□□□ 0.72
HDAC4-213ENST00000496347 CEP126Q9P2H0 1117 aa19.56■□□□□ 0.72
HDAC4-213ENST00000496347 SRGAP3O43295 1099 aa19.55■□□□□ 0.72
HDAC4-213ENST00000496347 HDLBPQ00341 1268 aaKnown RBP19.55■□□□□ 0.72
HDAC4-213ENST00000496347 CHAF1AQ13111 956 aaPredicted RBP19.55■□□□□ 0.72
HDAC4-213ENST00000496347 SPDYE2Q495Y8 402 aa19.55■□□□□ 0.72
HDAC4-213ENST00000496347 PRAMEF18Q5VWM3 479 aa19.55■□□□□ 0.72
HDAC4-213ENST00000496347 REM2Q8IYK8 340 aaPredicted RBP19.55■□□□□ 0.72
HDAC4-213ENST00000496347 PRMT6Q96LA8 375 aaPredicted RBP19.55■□□□□ 0.72
HDAC4-213ENST00000496347 IQSEC3Q9UPP2 1182 aaPredicted RBP19.55■□□□□ 0.72
HDAC4-213ENST00000496347 PCDHAC2Q9Y5I4 1007 aa19.55■□□□□ 0.72
HDAC4-213ENST00000496347 OTOFQ9HC10 1997 aa19.54■□□□□ 0.72
HDAC4-213ENST00000496347 CLRN2A0PK11 232 aa19.54■□□□□ 0.72
HDAC4-213ENST00000496347 GNAI2P04899 355 aa19.54■□□□□ 0.72
HDAC4-213ENST00000496347 TTLL12Q14166 644 aaPredicted RBP19.54■□□□□ 0.72
HDAC4-213ENST00000496347 ARMC9Q7Z3E5 817 aa19.54■□□□□ 0.72
HDAC4-213ENST00000496347 FTSJ3Q8IY81 847 aaKnown RBP19.54■□□□□ 0.72
HDAC4-213ENST00000496347 CLUAP1Q96AJ1 413 aa19.54■□□□□ 0.72
HDAC4-213ENST00000496347 SAGE1Q9NXZ1 904 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms