RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 LGI3Q8N145 548 aa6.54□□□□□ -1.36
CPSF6-202ENST00000435070 RPUSD4Q96CM3 377 aaKnown RBP6.54□□□□□ -1.36
CPSF6-202ENST00000435070 EMC6Q9BV81 110 aa6.54□□□□□ -1.36
CPSF6-202ENST00000435070 PHF1O43189 567 aaPredicted RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 GALR2O43603 387 aaPredicted RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 C16orf52Q8NHV5 167 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 KCNG3Q8TAE7 436 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 TMEM171Q8WVE6 324 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 PILRAQ9UKJ1 303 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 NUP210LQ5VU65 1888 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 CYR61O00622 381 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 TTRP02766 147 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 PNMTP11086 282 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 EPHA1P21709 976 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 GCH1P30793 250 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 ROM1Q03395 351 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 C20orf196Q8IYI0 205 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 TMEM256Q8N2U0 113 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 OR2C3Q8N628 320 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 MS4A10Q96PG2 267 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 ZNF385AQ96PM9 386 aaKnown RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 OR10A2Q9H208 303 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 MSL2Q9HCI7 577 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 TBC1D29Q9UFV1 150 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 A0A1B0GU03 582 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 HCRTR1O43613 425 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 SFTPDP35247 375 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 RPL27P61353 136 aaKnown RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 C16orf82Q7Z2V1 217 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 RNASEH2CQ8TDP1 164 aaKnown RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 TMEM234Q8WY98 164 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 FAM3CQ92520 227 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 EXTL1Q92935 676 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 SPAG8Q99932 426 aaPredicted RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 AURKAIP1Q9NWT8 199 aaPredicted RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 TUBD1Q9UJT1 453 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 IGLV1-36A0A0B4J1U3 117 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 IGSF23A1L1A6 192 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 M0R2Z0 102 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 PLRG1O43660 514 aaKnown RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 CYB5R3P00387 301 aaPredicted RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 LCATP04180 440 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 HSPB1P04792 205 aaKnown RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 LINC00614P0C842 121 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 GZMHP20718 246 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 TAS2R46P59540 309 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 DYRK2Q92630 601 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 AKIRIN1Q9H9L7 192 aaPredicted RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 MED29Q9NX70 200 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 KCNIP1Q9NZI2 227 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 PCNX3Q9H6A9 2034 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 IGKV1D-43A0A0B4J1Z2 117 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 ZNF816-ZNF321PA0A0X1KG74 233 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 CT45A8P0DMV1 189 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 CT45A9P0DMV2 189 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 USF1P22415 310 aaPredicted RBP6.53□□□□□ -1.36
CPSF6-202ENST00000435070 RABIFP47224 123 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 CLDN17P56750 224 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 ZNF141Q15928 474 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 CT45A2Q5DJT8 189 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 LYPD6Q86Y78 171 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 FBXL14Q8N1E6 418 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 CLDND2Q8NHS1 167 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 NAGKQ9UJ70 344 aa6.53□□□□□ -1.36
CPSF6-202ENST00000435070 TRAV34A0A0B4J273 112 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 OPN1MWP04001 364 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 HPNP05981 417 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 OPN1MW2P0DN77 364 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 OPN1MW3P0DN78 364 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 FOLR3P41439 243 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 TSPAN7P41732 249 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 ZNF117Q03924 483 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 ELAVL3Q14576 367 aaKnown RBP6.52□□□□□ -1.37
CPSF6-202ENST00000435070 TESK1Q15569 626 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 C1orf194Q5T5A4 169 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 ADAMTSL4Q6UY14 1074 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 ZNF573Q86YE8 665 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 VSTM2LQ96N03 204 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 NUDT22Q9BRQ3 303 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 PBOV1Q9GZY1 135 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 ZNF442Q9H7R0 627 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 RARRES3Q9UL19 164 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 H7BYZ3 331 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 DYNLT3P51808 116 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 HNRNPA1L2Q32P51 320 aaKnown RBP6.52□□□□□ -1.37
CPSF6-202ENST00000435070 EMC4Q5J8M3 183 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 NANOS1Q8WY41 292 aaKnown RBP6.52□□□□□ -1.37
CPSF6-202ENST00000435070 C22orf15Q8WYQ4 148 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 RTN4RQ9BZR6 473 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 LIME1Q9H400 295 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 RNF24Q9Y225 148 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 GTF3C1Q12789 2109 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 IL11P20809 199 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 BRS3P32247 399 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 ZNF266Q14584 549 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 ZNF506Q5JVG8 444 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 SAPCD1Q5SSQ6 148 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 FAM90A2PQ658T7 463 aa6.52□□□□□ -1.37
CPSF6-202ENST00000435070 ZNF296Q8WUU4 475 aaPredicted RBP6.52□□□□□ -1.37
CPSF6-202ENST00000435070 PATE1Q8WXA2 126 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms