RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZNF835Q9Y2P0 537 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 DSPPQ9NZW4 1301 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 IGHV3-13P01766 116 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 IGHV3-7P01780 117 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 HLA-DQB1P01920 261 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 ERGP11308 486 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 ARL16Q0P5N6 197 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 LYG1Q8N1E2 194 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 OR4D10Q8NGI6 311 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 OR10D4PQ8NGN7 298 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 POM121L2Q96KW2 1035 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 TRAF4Q9BUZ4 470 aaPredicted RBP12.35□□□□□ -0.43
CPSF1-212ENST00000616140 OR5B21A6NL26 309 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 CCL3P10147 92 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 ZNF83P51522 516 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 ERVFC1-1P60608 527 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 CBLN2Q8IUK8 224 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 FBXO17Q96EF6 278 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 CACNA1HO95180 2353 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 IGHV3-43A0A0B4J1X8 118 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 CRYM-AS1A6NIL9 109 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 B3GALNT1O75752 331 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 IGHV3-43DP0DP04 118 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 BPIFB3P59826 476 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 EIF3IQ13347 325 aaKnown RBP12.35□□□□□ -0.43
CPSF1-212ENST00000616140 MRPL24Q96A35 216 aaKnown RBP12.35□□□□□ -0.43
CPSF1-212ENST00000616140 ISOC2Q96AB3 205 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 MS4A7Q9GZW8 240 aaPredicted RBP12.35□□□□□ -0.43
CPSF1-212ENST00000616140 SLC25A22Q9H936 323 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 UCK1Q9HA47 277 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 KIAA1456Q9P272 454 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 AMDHD2Q9Y303 409 aa12.35□□□□□ -0.43
CPSF1-212ENST00000616140 CDRT15L2A8MXV6 281 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 VDAC1P21796 283 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 PPP1CBP62140 327 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 STUMQ69YW2 141 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 GNB4Q9HAV0 340 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 SLC2A9Q9NRM0 540 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 TRGV8A0A0C4DH27 118 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 COX7A2P2O60397 106 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 ARG1P05089 322 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 IGHV4-34P06331 123 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 FABP4P15090 132 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 FOSL1P15407 271 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 WDR74Q6RFH5 385 aaPredicted RBP12.34□□□□□ -0.43
CPSF1-212ENST00000616140 OR2D2Q9H210 308 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 CREBBPQ92793 2442 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 ANKRD34CP0C6C1 535 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 SPP1P10451 314 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 KIR3DL2P43630 455 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 LIAT1Q6ZQX7 453 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 MRGPRDQ8TDS7 321 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 PILRAQ9UKJ1 303 aa12.34□□□□□ -0.43
CPSF1-212ENST00000616140 COL5A3P25940 1745 aaPredicted RBP12.33□□□□□ -0.43
CPSF1-212ENST00000616140 HSBP1O75506 76 aa12.33□□□□□ -0.43
CPSF1-212ENST00000616140 DAOP14920 347 aa12.33□□□□□ -0.43
CPSF1-212ENST00000616140 ETV3LQ6ZN32 361 aa12.33□□□□□ -0.43
CPSF1-212ENST00000616140 LRFN3Q9BTN0 628 aa12.33□□□□□ -0.43
CPSF1-212ENST00000616140 ZNF107Q9UII5 783 aaPredicted RBP12.33□□□□□ -0.43
CPSF1-212ENST00000616140 TET1Q8NFU7 2136 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 LINC00862A6NCI5 91 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 PPYP01298 95 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 TNFRSF1AP19438 455 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 TMEM241Q24JQ0 296 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 SPINK9Q5DT21 86 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 C17orf78Q8N4C9 275 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 ADAD2Q8NCV1 583 aaKnown RBP12.33□□□□□ -0.44
CPSF1-212ENST00000616140 TM4SF19Q96DZ7 209 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 HES4Q9HCC6 221 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 MRPS18BQ9Y676 258 aaKnown RBP12.33□□□□□ -0.44
CPSF1-212ENST00000616140 BMP5P22003 454 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 CD200P41217 278 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 FGF8P55075 233 aaPredicted RBP12.33□□□□□ -0.44
CPSF1-212ENST00000616140 CD200R1LQ6Q8B3 271 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 TBC1D26Q86UD7 250 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 ABHD3Q8WU67 409 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 LPAR3Q9UBY5 353 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 TCFL5Q9UL49 500 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 MPC1Q9Y5U8 109 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 C3orf80F5H4A9 247 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 HRASP01112 189 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 TTRP02766 147 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 GNG10P50151 68 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 KRTDAPP60985 99 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 AMELYQ99218 206 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 LIPGQ9Y5X9 500 aa12.33□□□□□ -0.44
CPSF1-212ENST00000616140 KIF13BQ9NQT8 1826 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 CHST1O43916 411 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 ASAH2BP0C7U1 165 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 SF3B5Q9BWJ5 86 aaKnown RBP12.32□□□□□ -0.44
CPSF1-212ENST00000616140 DBX1A6NMT0 343 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 SYNGR2O43760 224 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 IL9P15248 144 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 TUSC1Q2TAM9 212 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 AWAT1Q58HT5 328 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 LYZL2Q7Z4W2 148 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 SP7Q8TDD2 431 aaPredicted RBP12.32□□□□□ -0.44
CPSF1-212ENST00000616140 FAM210BQ96KR6 192 aa12.32□□□□□ -0.44
CPSF1-212ENST00000616140 ZNF385AQ96PM9 386 aaKnown RBP12.32□□□□□ -0.44
CPSF1-212ENST00000616140 GPR179Q6PRD1 2367 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms