RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 LPAR2Q9HBW0 351 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 CD1EP15812 388 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 JUNBP17275 347 aaPredicted RBP10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 SP6Q3SY56 376 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 FAM162BQ5T6X4 162 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 LINC01555Q8NAE3 123 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 FAAP24Q9BTP7 215 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 KLK11Q9UBX7 282 aa10.71□□□□□ -0.7
CCDC88A-207ENST00000436346 DDOSTP39656 456 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 CXorf58Q96LI9 332 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 LIPGQ9Y5X9 500 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 RPEL1Q2QD12 228 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 WNT1P04628 370 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 SFTA3P0C7M3 94 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 NXPH1P58417 271 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 TUSC5Q8IXB3 177 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 ERRFI1Q9UJM3 462 aaPredicted RBP10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 SPAARA0A1B0GVQ0 90 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 CCDC190Q86UF4 302 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 AKR7A2O43488 359 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 COL9A1P20849 921 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 C21orf58P58505 322 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 FAM109BQ6ICB4 259 aaPredicted RBP10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 C6orf201Q7Z4U5 140 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 S100A8P05109 93 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 ZNF574Q6ZN55 896 aaPredicted RBP10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 OTOGLQ3ZCN5 2332 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 SRD5A2P31213 254 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 OR4S2Q8NH73 311 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 CRISPLD2Q9H0B8 497 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 TCRBV5S2A0A599 114 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 SFTPCP11686 197 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 FNDC7Q5VTL7 733 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 MOGAT3Q86VF5 341 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 BOLA1Q9Y3E2 137 aa10.7□□□□□ -0.7
CCDC88A-207ENST00000436346 HIKESHIQ53FT3 197 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 PTPMT1Q8WUK0 201 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 EML5Q05BV3 1969 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC37A1P57057 533 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 FAM3AP98173 230 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC38A11Q08AI6 406 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 C19orf43Q9BQ61 176 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 IGKV3-7A0A075B6H7 116 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 GATCO43716 136 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 GYPAP02724 150 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 COX6B1P14854 86 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 BCL3P20749 454 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 CDC34P49427 236 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 CLEC12BQ2HXU8 276 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 PDPNQ86YL7 162 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 NOL4LQ96MY1 436 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 YTHDF2Q9Y5A9 579 aaKnown RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 PYCARD-AS1I3L0S3 204 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 TOX3O15405 576 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 TRAPPC2P0DI81 140 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 TRAPPC2BP0DI82 140 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 GALR1P47211 349 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 EVX1P49640 407 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 TMEM88Q6PEY1 159 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 GABRG3Q99928 467 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 C12orf10Q9HB07 376 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 CISD3P0C7P0 127 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 GABRA1P14867 456 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 WDR38Q5JTN6 314 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 B3GNTL1Q67FW5 361 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 PCOLCE2Q9UKZ9 415 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 PCNX3Q9H6A9 2034 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 OOEPA6NGQ2 149 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 J3KRW8 73 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 BCL2L11O43521 198 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 EML2O95834 649 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 EPPINO95925 133 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 ID4P47928 161 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 MIDNQ504T8 468 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 MYPOPQ86VE0 399 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 MASP2O00187 686 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 LPAR6P43657 344 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 HTRA4P83105 476 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 ADAM5Q6NVV9 412 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 FAHD1Q6P587 224 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 SMIM4Q8WVI0 70 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC6A13Q9NSD5 602 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 TRAPPC1Q9Y5R8 145 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 OR5B21A6NL26 309 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 HAND1O96004 215 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 MMP7P09237 267 aaPredicted RBP10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 ZNF260Q3ZCT1 412 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 TMEM229BQ8NBD8 167 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 OR5C1Q8NGR4 320 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 WASHC3Q9Y3C0 194 aa10.69□□□□□ -0.7
CCDC88A-207ENST00000436346 DSCAMO60469 2012 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 C1QBP02746 253 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 FPR2P25090 351 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 OR2W3Q7Z3T1 314 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 WDR89Q96FK6 387 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 OR1A1Q9P1Q5 309 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 PCDH15Q96QU1 1955 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 CTGFP29279 349 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 MMP15P51511 669 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms