RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LUZP4Q9P127 313 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 PRSS50Q9UI38 385 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 STARD10Q9Y365 291 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 ZNF732B4DXR9 585 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 WISP2O76076 250 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 SYNGR4O95473 234 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 FGF2P09038 288 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 PRF1P14222 555 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 GNRHRP30968 328 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 PPT1P50897 306 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 ZNF239Q16600 458 aaKnown RBP11.59□□□□□ -0.55
VPS54-203ENST00000409558 ZNF529Q6P280 563 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 NCKAP5O14513 1909 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 MSTNO14793 375 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 CNOT4O95628 575 aaKnown RBP11.59□□□□□ -0.55
VPS54-203ENST00000409558 RPL12P30050 165 aaKnown RBP11.59□□□□□ -0.55
VPS54-203ENST00000409558 H3F3CQ6NXT2 135 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 LPCAT3Q6P1A2 487 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 OR52M1Q8NGK5 317 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 ERGIC1Q969X5 290 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 SLC2A8Q9NY64 477 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 FBXL17Q9UF56 701 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 KCNIP3Q9Y2W7 256 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 LIPGQ9Y5X9 500 aa11.59□□□□□ -0.55
VPS54-203ENST00000409558 OR6C65A6NJZ3 312 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 FIGNL2A6NMB9 653 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 SYNGR1O43759 233 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 IL2RAP01589 272 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 GP1BAP07359 652 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 ZNF44P15621 663 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 FBXW12Q6X9E4 464 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 PSMF1Q92530 271 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 C2orf50Q96LR7 162 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 FBXO9Q9UK97 447 aaPredicted RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 UBE2J1Q9Y385 318 aaPredicted RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 HEATR1Q9H583 2144 aaKnown RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 A0A1W2PNU3 283 aaPredicted RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 FCGR3AP08637 254 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 SCTP09683 121 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 PRKACAP17612 351 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 AADACP22760 399 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 NHLH2Q02577 135 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 C10orf128Q5T292 105 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 NUFIP2Q7Z417 695 aaKnown RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 WDR5BQ86VZ2 330 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 Q96M66 194 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 SCGB3A2Q96PL1 93 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 OCSTAMPQ9BR26 566 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 ZNF552Q9H707 407 aaPredicted RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 BOKQ9UMX3 212 aaPredicted RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 CEP295Q9C0D2 2601 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 SERPINE3A8MV23 424 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 CA6P23280 308 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 TMEM33P57088 247 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 RPS16P62249 146 aaKnown RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 SPTAN1Q13813 2472 aaKnown RBP11.58□□□□□ -0.56
VPS54-203ENST00000409558 TLNRD1Q9H1K6 362 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 SLC25A32Q9H2D1 315 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 OR14J1Q9UGF5 321 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 OSGIN2Q9Y236 505 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 APC2O95996 2303 aa11.58□□□□□ -0.56
VPS54-203ENST00000409558 A0A0U1RQV5 110 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 A8MXK9 166 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 ETV2O00321 342 aaPredicted RBP11.57□□□□□ -0.56
VPS54-203ENST00000409558 RPL35P42766 123 aaKnown RBP11.57□□□□□ -0.56
VPS54-203ENST00000409558 GLP1RP43220 463 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 PDZK1IP1Q13113 114 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 TMEM268Q5VZI3 342 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 CNEP1R1Q8N9A8 125 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 OR2M7Q8NG81 312 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 HIST1H2AAQ96QV6 131 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 C1orf123Q9NWV4 160 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 OTOGLQ3ZCN5 2332 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 CST7O76096 145 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 DAOP14920 347 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 CCL11P51671 97 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 CYCSP99999 105 aaKnown RBP11.57□□□□□ -0.56
VPS54-203ENST00000409558 STK11Q15831 433 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 OR2B11Q5JQS5 317 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 VAX1Q5SQQ9 334 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 ADPRHL1Q8NDY3 354 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 V9GYS6 101 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 APOC1P02654 83 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 NAT2P11245 290 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 IDH3GP51553 393 aaPredicted RBP11.57□□□□□ -0.56
VPS54-203ENST00000409558 PRDX4Q13162 271 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 PPA1Q15181 289 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 CPT1CQ8TCG5 803 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 NKX6-2Q9C056 277 aaPredicted RBP11.57□□□□□ -0.56
VPS54-203ENST00000409558 AUP1Q9Y679 476 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 ADGRG4Q8IZF6 3080 aa11.57□□□□□ -0.56
VPS54-203ENST00000409558 SERPINA7P05543 415 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 ICAM2P13598 275 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 ARG2P78540 354 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 SSPNQ14714 243 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 LTC4SQ16873 150 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 PNLIPRP3Q17RR3 467 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 PUSL1Q8N0Z8 303 aaKnown RBP11.56□□□□□ -0.56
VPS54-203ENST00000409558 TMEM251Q8N6I4 163 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 EXTL1Q92935 676 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms