RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 CXCR4P61073 352 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ACTA2P62736 377 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ACTG2P63267 376 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ACTC1P68032 377 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ACTA1P68133 377 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 SLC34A1Q06495 639 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 UBE2V2Q15819 145 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 SNAPC1Q16533 368 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ODF4Q2M2E3 257 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ZNF829Q3KNS6 432 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 UTF1Q5T230 341 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 BCL2L15Q5TBC7 163 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ZNF322Q6U7Q0 402 aaPredicted RBP12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 Q6ZSR3 168 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 CCDC121Q6ZUS5 278 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ELMOD2Q8IZ81 293 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 OR5AU1Q8NGC0 362 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 SLAMF9Q96A28 289 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ASB9Q96DX5 294 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ZNF714Q96N38 554 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 ADGRL4Q9HBW9 690 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 OR52A1Q9UKL2 312 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 POLDIP2Q9Y2S7 368 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 R4GMQ9 66 aa12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 DYNC2H1Q8NCM8 4307 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 HUWE1Q7Z6Z7 4374 aaKnown RBP12.37□□□□□ -0.43
CLSTN3-213ENST00000541953 IGHV2-26A0A0B4J1V2 119 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 FAM230AA0A1W2PPH8 454 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 FAM172BPA6NC97 362 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 ZNF254O75437 659 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 RBP4P02753 201 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 CALCBP10092 127 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 EPHA2P29317 976 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 GDNFP39905 211 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 IL24Q13007 206 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 GK3PQ14409 553 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 ARSJQ5FYB0 599 aaPredicted RBP12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 VAX1Q5SQQ9 334 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 OR8H2Q8N162 312 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 ARHGAP24Q8N264 748 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 OR4P4Q8NGL7 312 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 NSL1Q96IY1 281 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 CNN2Q99439 309 aaKnown RBP12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 PKIBQ9C010 78 aa12.36□□□□□ -0.43
CLSTN3-213ENST00000541953 PSPNO60542 156 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 PEX14O75381 377 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 E2F6O75461 281 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 AMY1AP04745 511 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 AMY2AP04746 511 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 VSIG8P0DPA2 414 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 CCL1P22362 96 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 DUSP1P28562 367 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 HOXD3P31249 432 aaPredicted RBP12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 NPBWR2P48146 333 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 DAPP51397 102 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 GDPD3Q7L5L3 318 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 SLC35F2Q8IXU6 374 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 ZNF676Q8N7Q3 588 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 NDNFQ8TB73 568 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 INPP5EQ9NRR6 644 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 PITPNC1Q9UKF7 332 aa12.35□□□□□ -0.43
CLSTN3-213ENST00000541953 DNAH7Q8WXX0 4024 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 GNGT2O14610 69 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 MITFO75030 526 aaPredicted RBP12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 RPP14O95059 124 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 CRISP1P54107 249 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 PRAMEF5Q5TYX0 476 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 LCN1P1Q5VSP4 162 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 RNF144BQ7Z419 303 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 BCAS4Q8TDM0 211 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 ASB17Q8WXJ9 295 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 MYDGFQ969H8 173 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 CEP19Q96LK0 163 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 LRGUKQ96M69 825 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 TBX5Q99593 518 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 TMEM133Q9H2Q1 129 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 MOB1AQ9H8S9 216 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 ZNF556Q9HAH1 456 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 RBFOX1Q9NWB1 397 aaKnown RBP12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 DNAJB9Q9UBS3 223 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 SESN1Q9Y6P5 492 aa12.34□□□□□ -0.43
CLSTN3-213ENST00000541953 APOL3O95236 402 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 HAND1O96004 215 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 LPLP06858 475 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 CHRM2P08172 466 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 PF4V1P10720 104 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 ANXA8P13928 327 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 SNU13P55769 128 aaKnown RBP12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 OR12D2P58182 307 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 EFNB1P98172 346 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 ZNF91Q05481 1191 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 PTGES3Q15185 160 aaKnown RBP12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 ABCA11PQ4W5N1 156 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 KIAA2026Q5HYC2 2103 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 MINOS1Q5TGZ0 78 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 AADACL4Q5VUY2 407 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 ETV3LQ6ZN32 361 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 SLC25A26Q70HW3 274 aa12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 MEPCEQ7L2J0 689 aaKnown RBP12.33□□□□□ -0.44
CLSTN3-213ENST00000541953 CLEC7AQ9BXN2 247 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms