RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DUSP28Q4G0W2 176 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 TRMT12Q53H54 448 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 ACTL10Q5JWF8 245 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 GPR157Q5UAW9 335 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 SLC48A1Q6P1K1 146 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 LYZL2Q7Z4W2 148 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 SUMF1Q8NBK3 374 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 CADM4Q8NFZ8 388 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 OR52M1Q8NGK5 317 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 PINX1Q96BK5 328 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 RSPRY1Q96DX4 576 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 RASL10BQ96S79 203 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 GABRG3Q99928 467 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 AICDAQ9GZX7 198 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 MANBALQ9NQG1 85 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 KLHL13Q9P2N7 655 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 PRSS50Q9UI38 385 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 TUBD1Q9UJT1 453 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 WIPI2Q9Y4P8 454 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 TRAPPC1Q9Y5R8 145 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 LOC102723971A0A1B0GUV8 181 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 GALR2O43603 387 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 VSIG8P0DPA2 414 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 HIST1H1TP22492 207 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 RAB28P51157 221 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 EWSR1Q01844 656 aaKnown RBP eCLIP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 VGLL4Q14135 290 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 ITPRIPL2Q3MIP1 535 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 C9orf50Q5SZB4 431 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 ZAR1Q86SH2 424 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 MYPOPQ86VE0 399 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 SULF2Q8IWU5 870 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 H1FOOQ8IZA3 346 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 OR2D3Q8NGH3 330 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 RBMXL1Q96E39 390 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 ATP5SQ99766 215 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 LMF2Q9BU23 707 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 BET1LQ9NYM9 111 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 CACNA1IQ9P0X4 2223 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 MEGF11A6BM72 1044 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 LDB3O75112 727 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 CST7O76096 145 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 CSNK1A1P48729 337 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 MRPS34P82930 218 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 SAMD10Q9BYL1 202 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 Q9N2K0 584 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 B3GALT1Q9Y5Z6 326 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 EML5Q05BV3 1969 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 MYO9BQ13459 2157 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 C17orf102A2RUQ5 167 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 VSTM2BA6NLU5 285 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 GPR89AB7ZAQ6 455 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 K7ERU9 68 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 GDF9O60383 454 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF205O95201 554 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 GPR89BP0CG08 455 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 TMEM225BP0DP42 221 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 TNFSF4P23510 183 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 CD52P31358 61 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 CAPZBP47756 277 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 SLC17A1Q14916 467 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 TSPO2Q5TGU0 170 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 TGIF2LYQ8IUE0 185 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 EMG1Q92979 244 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 SMIM12Q96EX1 92 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 GPR84Q9NQS5 396 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 KIAA2026Q5HYC2 2103 aa10.57□□□□□ -0.72
LIMCH1-213ENST00000511496 MYADML2A6NDP7 307 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF878C9JN71 531 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 OR6A2O95222 327 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ONECUT2O95948 504 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 CD70P32970 193 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 VIPR2P41587 438 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 PSEN2P49810 448 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 GTF3C1Q12789 2109 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF266Q14584 549 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 GNMTQ14749 295 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 BSXQ3C1V8 233 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 DMRTC1Q5HYR2 192 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 BOD1Q96IK1 185 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 LYRM2Q9NU23 88 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 CLEC5AQ9NY25 188 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 CLN8Q9UBY8 286 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 UQCR10Q9UDW1 63 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 DOCK11Q5JSL3 2073 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 A0A0U1RQK1 487 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 C22orf46C9J442 243 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ST8SIA3O43173 380 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 CTSDP07339 412 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 NBEAP1P0C6P0 100 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 CFPP27918 469 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 EMDP50402 254 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 SNU13P55769 128 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 VAX1Q5SQQ9 334 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 OR52R1Q8NGF1 315 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 KTI12Q96EK9 354 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 SPACA7Q96KW9 195 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 PYGO2Q9BRQ0 406 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 ARPC3O15145 178 aa10.56□□□□□ -0.72
LIMCH1-213ENST00000511496 HBE1P02100 147 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms