RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 IGHV2-70DA0A0C4DH43 119 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 BTBD17A6NE02 478 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 RFPL4AA6NLU0 287 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 RFPL4AL1F8VTS6 287 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 SH2D1BO14796 132 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 TCF21O43680 179 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 RRP9O43818 475 aaKnown RBP6.71□□□□□ -1.34
USP40-216ENST00000485943 SRSF10O75494 262 aaKnown RBP6.71□□□□□ -1.34
USP40-216ENST00000485943 TOX4O94842 621 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 ZFPL1O95159 310 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 FSTL3O95633 263 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 PAHP00439 452 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 CDK1P06493 297 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 ZNF44P15621 663 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 EGR1P18146 543 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 MYF6P23409 242 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 PMELP40967 661 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 GTF2A1P52655 376 aaPredicted RBP6.71□□□□□ -1.34
USP40-216ENST00000485943 IL24Q13007 206 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 C21orf62-AS1Q17RA5 79 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 LYPD2Q6UXB3 125 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 UTS2BQ765I0 119 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 FAM90A1Q86YD7 464 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 ZNF561Q8N587 486 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 JAGN1Q8N5M9 183 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 POC1AQ8NBT0 407 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 DNAAF1Q8NEP3 725 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 OR5D13Q8NGL4 314 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 TBC1D15Q8TC07 691 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 TNFAIP8L1Q8WVP5 186 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 ADAT3Q96EY9 351 aaPredicted RBP6.71□□□□□ -1.34
USP40-216ENST00000485943 C1orf159Q96HA4 380 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 JAM3Q9BX67 310 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 SUCNR1Q9BXA5 334 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 ANKRD60Q9BZ19 345 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 DNTTIP1Q9H147 329 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 EXOSC4Q9NPD3 245 aaKnown RBP6.71□□□□□ -1.34
USP40-216ENST00000485943 PLCXD1Q9NUJ7 323 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 FAM96BQ9Y3D0 163 aa6.71□□□□□ -1.34
USP40-216ENST00000485943 TRAV40A0A0B4J280 105 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 PPIAL4CA0A0B4J2A2 164 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 A0A1B0GTI1 187 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 A0A1B0GWJ7 208 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 PQLC2LA1A4F0 135 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 OR4C45A6NMZ5 311 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 ZNF879B4DU55 563 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 SPRY1O43609 319 aaPredicted RBP6.7□□□□□ -1.34
USP40-216ENST00000485943 SYNGR1O43759 233 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 RHBDL1O75783 438 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 CHRM2P08172 466 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 LIMS3P0CW19 117 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 LIMS4P0CW20 117 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 PPIAL4GP0DN37 164 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 ADRA2CP18825 462 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 ANOS1P23352 680 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 C21orf33P30042 268 aaPredicted RBP6.7□□□□□ -1.34
USP40-216ENST00000485943 BDKRB2P30411 391 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 PRDX2P32119 198 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 ZNF93P35789 620 aaPredicted RBP6.7□□□□□ -1.34
USP40-216ENST00000485943 CFHR2P36980 270 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 LGALS4P56470 323 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 NANOS3P60323 173 aaKnown RBP6.7□□□□□ -1.34
USP40-216ENST00000485943 SEC61A1P61619 476 aaKnown RBP6.7□□□□□ -1.34
USP40-216ENST00000485943 EDDM3AQ14507 147 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 SPHARQ15513 63 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 TRAM1Q15629 374 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 UBE2V2Q15819 145 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 Q499Y3 187 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 TM4SF20Q53R12 229 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 DDI2Q5TDH0 399 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 TEX36Q5VZQ5 186 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 ACP7Q6ZNF0 438 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 BTN2A1Q7KYR7 527 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 WDR86Q86TI4 376 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 FAM58AQ8N1B3 248 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 MS4A15Q8N5U1 240 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 FAM216BQ8N7L0 139 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 NRG4Q8WWG1 115 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 GHSRQ92847 366 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 ZNF488Q96MN9 340 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 CLUHP3Q96NS8 147 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 SPACA5Q96QH8 159 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 TMED9Q9BVK6 235 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 METTL9Q9H1A3 318 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 TLNRD1Q9H1K6 362 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 WDR13Q9H1Z4 485 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 PPP1R3EQ9H7J1 279 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 TMEM138Q9NPI0 162 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 TAS2R4Q9NYW5 299 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 CLEC2DQ9UHP7 191 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 GSTK1Q9Y2Q3 226 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 INSIG2Q9Y5U4 225 aa6.7□□□□□ -1.34
USP40-216ENST00000485943 TEP1Q99973 2627 aaKnown RBP6.7□□□□□ -1.34
USP40-216ENST00000485943 TLN2Q9Y4G6 2542 aa6.69□□□□□ -1.34
USP40-216ENST00000485943 RNF212BA8MTL3 300 aa6.69□□□□□ -1.34
USP40-216ENST00000485943 A8MXK9 166 aa6.69□□□□□ -1.34
USP40-216ENST00000485943 E9PI62 339 aa6.69□□□□□ -1.34
USP40-216ENST00000485943 F5H0A9 414 aaPredicted RBP6.69□□□□□ -1.34
USP40-216ENST00000485943 H3BUI4 141 aa6.69□□□□□ -1.34
USP40-216ENST00000485943 J3QRE1 110 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms