RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 P2RX1P51575 399 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 APOC4P55056 127 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCL23P55773 120 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NDUFV3P56181 108 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TCL1AP56279 114 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLDN12P56749 244 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 H2BFSP57053 126 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM33P57088 247 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TCTAP57738 103 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAS2R43P59537 309 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PFN3P60673 137 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C1QTNF8P60827 252 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSME3P61289 254 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 HERVK_113P61574 105 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 NAA20P61599 178 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 AP1S1P61966 158 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPS23P62266 143 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SELENOTP62341 195 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPS21P63220 83 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 HBG1P69891 147 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 HBG2P69892 147 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC35A2P78381 396 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 BTN3A2P78410 334 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARG2P78540 354 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRR3P79522 188 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC7A9P82251 487 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GTF2BQ00403 316 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IL5RAQ01344 420 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 IFITM2Q01629 132 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 EMX1Q04741 257 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ACVR1Q04771 509 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 MXD1Q05195 221 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FMODQ06828 376 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD300CQ08708 224 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD47Q08722 323 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF763Q0D2J5 394 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 AQP6Q13520 282 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARFRP1Q13795 201 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GINS1Q14691 196 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C16orf72Q14CZ0 275 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PAFAH1B3Q15102 231 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PMVKQ15126 192 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SIX1Q15475 284 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR1Q1Q15612 314 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRR4Q16378 134 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCL14Q16627 93 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRSS8Q16651 343 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF630Q2M218 657 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C17orf58Q2M2W7 97 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 LRRC75BQ2VPJ9 315 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CEACAM16Q2WEN9 425 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARHGAP11BQ3KRB8 267 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ODF3L2Q3SX64 289 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KRTAP13-3Q3SY46 172 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FBXL19-AS1Q494R0 122 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCDC153Q494R4 210 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDNFQ49AH0 187 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CCDC58Q4VC31 144 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZCWPW2Q504Y3 356 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ATP6AP1LQ52LC2 224 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRMT12Q53H54 448 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ACSBG2Q5FVE4 666 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TFDP3Q5H9I0 405 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TTC32Q5I0X7 151 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR2B11Q5JQS5 317 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM255AQ5JRV8 349 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 COA6Q5JTJ3 125 aaKnown RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CLEC12AQ5QGZ9 265 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C1orf100Q5SVJ3 147 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM162BQ5T6X4 162 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GPRC6AQ5T6X5 926 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C9orf66Q5T8R8 295 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OTPQ5XKR4 325 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 STEAP4Q687X5 459 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 KCTD16Q68DU8 428 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPINK14Q6IE38 97 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM53AQ6NSI3 398 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 UFSP1Q6NVU6 142 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF343Q6P1L6 599 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CNIH2Q6PI25 160 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 UNQ9370/PRO34162Q6UXP9 181 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C2orf66Q6UXQ4 117 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CASP12Q6UXS9 341 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 C12orf54Q6X4T0 127 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SCGB1D4Q6XE38 83 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 SPNS3Q6ZMD2 512 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF620Q6ZNG0 422 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 GDPGP1Q6ZNW5 385 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 Q6ZRP5 223 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 RASSF6Q6ZTQ3 369 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 Q6ZVH6 145 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM231DQ6ZW35 169 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OLIG3Q7RTU3 272 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM144Q7Z5S9 345 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 OAFQ86UD1 273 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF589Q86UQ0 364 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 COMMD7Q86VX2 200 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 CATSPER3Q86XQ3 398 aa0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 PHF13Q86YI8 300 aaPredicted RBP0.45□□□□□ -2.34
RNU4-54P-201ENST00000516428 DOLPP1Q86YN1 238 aa0.45□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms