RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 NLRC5Q86WI3 1866 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 A0A0A6YYD5 115 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 GRIFINA4D1Z8 144 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 MAP1LC3B2A6NCE7 125 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 SERPINA7P05543 415 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 FAM3BP58499 235 aaPredicted RBP10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 ZFP36L1Q07352 338 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 METRNLQ641Q3 311 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 MAP1LC3BQ9GZQ8 125 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 CALHM2Q9HA72 323 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 KIF26BQ2KJY2 2108 aa10.61□□□□□ -0.71
LIMCH1-213ENST00000511496 FAM24AA6NFZ4 105 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 MPZL1O95297 269 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 DBIP07108 87 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 PSG1P11464 419 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 GCH1P30793 250 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 DUSP3P51452 185 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 EMP2P54851 167 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 DMWDQ09019 674 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 TPTE2P1Q5T6R2 138 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 CFAP161Q6P656 301 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 DPY19L2P2Q6ZN68 376 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 Q6ZWC4 215 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 NPAS4Q8IUM7 802 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 DCAF4L2Q8NA75 395 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 DTWD2Q8NBA8 298 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 WFDC12Q8WWY7 111 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 SPACA5Q96QH8 159 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 MKKSQ9NPJ1 570 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 B3GALT5Q9Y2C3 310 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 OR51B4Q9Y5P0 310 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 TRAV39A0A0B4J263 110 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 FIGNL2A6NMB9 653 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 DBHP09172 617 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF43P17038 809 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 CSNK2A1P68400 391 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 LCN15Q6UWW0 184 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 TMEM217Q8N7C4 229 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 ST6GALNAC3Q8NDV1 305 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 CSNK2A3Q8NEV1 391 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 CMTM2Q8TAZ6 248 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF703Q9H7S9 590 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF160Q9HCG1 818 aa10.6□□□□□ -0.71
LIMCH1-213ENST00000511496 IGHV2-70DA0A0C4DH43 119 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 NUDT21O43809 227 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 PIAS2O75928 621 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 SOD2P04179 222 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 FLT3LGP49771 235 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 UNC119Q13432 240 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 PRR27Q6MZM9 219 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 TEX43Q6ZNM6 134 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 SLC24A5Q71RS6 500 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 CDC20BQ86Y33 519 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF619Q8N2I2 560 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 MEGF9Q9H1U4 602 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 HSPB7Q9UBY9 170 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 CEBPZOSA8MTT3 80 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 GRXCR1A8MXD5 290 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 CTSVO60911 334 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 LILRA1O75019 489 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 PRLHRP49683 370 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 CTXN1P60606 82 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 SNRPD1P62314 119 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 EXOSC7Q15024 291 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 ARL6IP1Q15041 203 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 FBXW12Q6X9E4 464 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 OR51G1Q8NGK1 321 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 FAM3CQ92520 227 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 CTDSP1Q9GZU7 261 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 ZNF665Q9H7R5 613 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 GPR34Q9UPC5 381 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 IGHV2OR16-5A0A0B4J2B6 119 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 A0A0B4J2E0 115 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 A0A1B0GX12 115 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 MPIG6BO95866 241 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 KRTDAPP60985 99 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 MFGE8Q08431 387 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 SPATA45Q537H7 98 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 OGFOD3Q6PK18 319 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 D2HGDHQ8N465 521 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 ALG14Q96F25 216 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 SMIM7Q9BQ49 75 aa10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 FAM103A1Q9BTL3 118 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 SF3B5Q9BWJ5 86 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-213ENST00000511496 MPDZO75970 2070 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 C4orf51C9J302 202 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 TOMM40O96008 361 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 SUMO1P63165 101 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 NHLH1Q02575 133 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 DCST2Q5T1A1 773 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 OR2T10Q8NGZ9 312 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 LPAR5Q9H1C0 372 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 BANF2Q9H503 90 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF814B7Z6K7 855 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 NDUFS8O00217 210 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 SOCS1O15524 211 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 RPS4Y1P22090 263 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 RAB38P57729 211 aa10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 SMAD3P84022 425 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-213ENST00000511496 SHHQ15465 462 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms