RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SMLR1H3BR10 107 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 M0R135 149 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 RAB27BO00194 218 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 MTRF1O75570 445 aaKnown RBP11.51□□□□□ -0.57
LIMS1-204ENST00000409441 DHRS3O75911 302 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 RAB3DO95716 219 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 CYB5AP00167 134 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 CD74P04233 296 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 CD3DP04234 171 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 PRF1P14222 555 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 S100A1P23297 94 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 LOXP28300 417 aaPredicted RBP11.51□□□□□ -0.57
LIMS1-204ENST00000409441 WNT5AP41221 380 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 SLC6A9P48067 706 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 UCP2P55851 309 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 ZP1P60852 638 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 HGFACQ04756 655 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 MEF2DQ14814 521 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 MOGAT2Q3SYC2 334 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 Q5BKY6 102 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 LAMTOR1Q6IAA8 161 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 DRAM2Q6UX65 266 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 SLC36A1Q7Z2H8 476 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 ANGPTL5Q86XS5 388 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 C9orf62Q8N4C0 152 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 OR52H1Q8NGJ2 320 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 KCNG3Q8TAE7 436 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF431Q8TF32 576 aaPredicted RBP11.51□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF799Q96GE5 643 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 ALX4Q9H161 411 aaPredicted RBP11.51□□□□□ -0.57
LIMS1-204ENST00000409441 GHRLQ9UBU3 117 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 MRPS28Q9Y2Q9 187 aaKnown RBP11.51□□□□□ -0.57
LIMS1-204ENST00000409441 RNF115Q9Y4L5 304 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 SPEF1Q9Y4P9 236 aa11.51□□□□□ -0.57
LIMS1-204ENST00000409441 UBE2QL1A1L167 161 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 DHRS7CA6NNS2 312 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 SNAPC5O75971 98 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 PLAUP00749 431 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 NGFP01138 241 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 LCATP04180 440 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 HCKP08631 526 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 ANXA7P20073 488 aaKnown RBP11.5□□□□□ -0.57
LIMS1-204ENST00000409441 MPZP25189 248 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 ALDH3B1P43353 468 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 ZMYND11Q15326 602 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 ADAM5Q6NVV9 412 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 Q6ZTK2 550 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF101Q8IZC7 436 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 PNLDC1Q8NA58 520 aaKnown RBP11.5□□□□□ -0.57
LIMS1-204ENST00000409441 OR51S1Q8NGJ8 323 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 SEC22CQ9BRL7 303 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 OR10A2Q9H208 303 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 OR51B6Q9H340 312 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 MYOZ1Q9NP98 299 aaPredicted RBP11.5□□□□□ -0.57
LIMS1-204ENST00000409441 HSPB11Q9Y547 144 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 DOPEY2Q9Y3R5 2298 aa11.5□□□□□ -0.57
LIMS1-204ENST00000409441 MEIS3P1A6NDR6 274 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 SHISA9B4DS77 424 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF736B4DX44 427 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF780AO75290 641 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-204ENST00000409441 GSTP1P09211 210 aaKnown RBP11.49□□□□□ -0.57
LIMS1-204ENST00000409441 GIPP09681 153 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-204ENST00000409441 TBPP20226 339 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 GLIPR1L1Q6UWM5 242 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 COLCA1Q6ZS62 124 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF767PQ75MW2 155 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 OR4D10Q8NGI6 311 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 OR10R2Q8NGX6 335 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 CCDC107Q8WV48 283 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 LYZL4Q96KX0 146 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 TMEM204Q9BSN7 226 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 SOX7Q9BT81 388 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 C1QTNF5Q9BXJ0 243 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 SLC2A8Q9NY64 477 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 MGAT4CQ9UBM8 478 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF69Q9UC07 566 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 MGAT4AQ9UM21 535 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 STARD10Q9Y365 291 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 ATP23Q9Y6H3 246 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 CADP27708 2225 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 FAM221AA4D161 298 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 TMEM235A6NFC5 223 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 DISC1C4P0D8 188 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 DNASE1P24855 282 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 RIPPLY1Q0D2K3 151 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 CDNFQ49AH0 187 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 UNQ6126/PRO20091Q6UXV3 157 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 NLRC3Q7RTR2 1065 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 CHST4Q8NCG5 386 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 ASB13Q8WXK3 278 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 NEUROG1Q92886 237 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 APOBEC3DQ96AK3 386 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-204ENST00000409441 C1orf147Q96MC9 270 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-204ENST00000409441 GAL3ST1Q99999 423 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 CHST5Q9GZS9 411 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 LPAR5Q9H1C0 372 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 MYEF2Q9P2K5 600 aaKnown RBP11.49□□□□□ -0.57
LIMS1-204ENST00000409441 ZNF391Q9UJN7 358 aa11.49□□□□□ -0.57
LIMS1-204ENST00000409441 HEATR1Q9H583 2144 aaKnown RBP11.48□□□□□ -0.57
LIMS1-204ENST00000409441 PKDREJQ9NTG1 2253 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms