RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 C16orf72Q14CZ0 275 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 C5orf47Q569G3 176 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 IDNKQ5T6J7 187 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 CLEC19AQ6UXS0 136 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 BBS7Q8IWZ6 715 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 SELENOHQ8IZQ5 122 aaKnown RBP4.43□□□□□ -1.7
NUP54-215ENST00000514313 OR2M7Q8NG81 312 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 ZNF396Q96N95 335 aaPredicted RBP4.43□□□□□ -1.7
NUP54-215ENST00000514313 METTL26Q96S19 204 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 ZNF649Q9BS31 505 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 OR52A5Q9H2C5 316 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 SPACA1Q9HBV2 294 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 TMBIM4Q9HC24 238 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 CA10Q9NS85 328 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 CABIN1Q9Y6J0 2220 aa4.43□□□□□ -1.7
NUP54-215ENST00000514313 IQCF5A8MTL0 148 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 CENPBD1B2RD01 187 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 RNASEK-C17orf49H0YIS7 233 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 BRI3O95415 125 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 LDOC1O95751 146 aaPredicted RBP4.42□□□□□ -1.7
NUP54-215ENST00000514313 OR2B6P58173 313 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 PITPNAQ00169 270 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 PIGHQ14442 188 aaPredicted RBP4.42□□□□□ -1.7
NUP54-215ENST00000514313 AHSA2Q719I0 299 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 BHLHA15Q7RTS1 189 aaPredicted RBP4.42□□□□□ -1.7
NUP54-215ENST00000514313 ZNF101Q8IZC7 436 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 CCNYL1Q8N7R7 359 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 SLC25A29Q8N8R3 303 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 OR4K2Q8NGD2 314 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 OR2Y1Q8NGV0 311 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 OR51Q1Q8NH59 317 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 HGDQ93099 445 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 MRPL48Q96GC5 212 aaKnown RBP4.42□□□□□ -1.7
NUP54-215ENST00000514313 TAS2R5Q9NYW4 299 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 GMEB1Q9Y692 573 aa4.42□□□□□ -1.7
NUP54-215ENST00000514313 PLPP3O14495 311 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 BET1O15155 118 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 MPZL1O95297 269 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 CYB5R3P00387 301 aaPredicted RBP4.41□□□□□ -1.7
NUP54-215ENST00000514313 TSPAN5P62079 268 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 FBXL19-AS1Q494R0 122 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 Q6ZT83 130 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 LINC00337Q8N6G1 96 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 LRRC52Q8N7C0 313 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 OR9A2Q8NGT5 310 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 OR5P2Q8WZ92 322 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 RILPQ96NA2 401 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 SERPINB11Q96P15 392 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 CATSPER2Q96P56 530 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 SPACA5Q96QH8 159 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 CYTH2Q99418 400 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 DOK1Q99704 481 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 IFT46Q9NQC8 304 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 NLE1Q9NVX2 485 aaPredicted RBP4.41□□□□□ -1.7
NUP54-215ENST00000514313 PRO0628Q9UI54 55 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 CBY1Q9Y3M2 126 aa4.41□□□□□ -1.7
NUP54-215ENST00000514313 AHDC1Q5TGY3 1603 aaPredicted RBP4.41□□□□□ -1.7
NUP54-215ENST00000514313 NPHP4O75161 1426 aaPredicted RBP4.4□□□□□ -1.7
NUP54-215ENST00000514313 LOC102724200A0A096LPH7 203 aaPredicted RBP4.4□□□□□ -1.71
NUP54-215ENST00000514313 TCAPO15273 167 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 SHOX2O60902 331 aaPredicted RBP4.4□□□□□ -1.71
NUP54-215ENST00000514313 MAGEA3P43357 314 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 CEACAM16Q2WEN9 425 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 ZNF470Q6ECI4 717 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 SHISA6Q6ZSJ9 500 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 C17orf78Q8N4C9 275 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 OR8G5Q8NG78 346 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 OR2Z1Q8NG97 314 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 CLHC1Q8NHS4 586 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 ANGPTL6Q8NI99 470 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 OR10C1Q96KK4 312 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 MARVELD1Q9BSK0 173 aa4.4□□□□□ -1.71
NUP54-215ENST00000514313 TMEM131Q92545 1883 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 IGHV1-3A0A0C4DH29 117 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 HLA-GP17693 338 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 TAS2R43P59537 309 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 RPL10AP62906 217 aaKnown RBP4.39□□□□□ -1.71
NUP54-215ENST00000514313 ELF3P78545 371 aaPredicted RBP4.39□□□□□ -1.71
NUP54-215ENST00000514313 ZNF816Q0VGE8 651 aaPredicted RBP4.39□□□□□ -1.71
NUP54-215ENST00000514313 EIF4EBP1Q13541 118 aaPredicted RBP4.39□□□□□ -1.71
NUP54-215ENST00000514313 LUZP6Q538Z0 58 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 OR5M1Q8NGP8 315 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 OR2M4Q96R27 311 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 MS4A12Q9NXJ0 267 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 MAP3K19Q56UN5 1328 aa4.39□□□□□ -1.71
NUP54-215ENST00000514313 A0A0G2JMP0 313 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 A0A0X1KG70 313 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 TMEM72A0PK05 275 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 C7orf66A4D0T2 115 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 ISPDA4D126 451 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 CDIPTO14735 213 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 ZNF32P17041 273 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 SYT1P21579 422 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 TPBGQ13641 420 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 ZNF880Q6PDB4 577 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 PRNTQ86SH4 94 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 TMEM25Q86YD3 366 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 SPICQ8N5J4 248 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 OR2AE1Q8NHA4 323 aa4.38□□□□□ -1.71
NUP54-215ENST00000514313 SMIM8Q96KF7 97 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms