RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 H7C417 338 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 CHRM2P08172 466 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 CCKARP32238 428 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 BTCP35070 178 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 NAAAQ02083 359 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 PDZK1IP1Q13113 114 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 ZNF260Q3ZCT1 412 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 TMEM211Q6ICI0 200 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 Q6ZTK2 550 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 RTN4RL2Q86UN3 420 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 CALHM1Q8IU99 346 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 GPX8Q8TED1 209 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 RND1Q92730 232 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 MUCL1Q96DR8 90 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 NUDT16L1Q9BRJ7 211 aaKnown RBP14.46□□□□□ -0.09
CLN3-252ENST00000636907 URM1Q9BTM9 101 aaKnown RBP14.46□□□□□ -0.09
CLN3-252ENST00000636907 METTL9Q9H1A3 318 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 MOV10Q9HCE1 1003 aaKnown RBP14.46□□□□□ -0.09
CLN3-252ENST00000636907 ELOVL5Q9NYP7 299 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 MTFP1Q9UDX5 166 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 MPC1Q9Y5U8 109 aa14.46□□□□□ -0.09
CLN3-252ENST00000636907 IGKV1-12A0A0C4DH73 117 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 ANKRD20A5PA0PJZ0 165 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 TMEM235A6NFC5 223 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 M0R1B8 84 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 SOCS1O15524 211 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 RBBP9O75884 186 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 ECDO95905 644 aaPredicted RBP14.46□□□□□ -0.1
CLN3-252ENST00000636907 IGKV1D-12P01611 117 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 RAC2P15153 192 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 MPV17P39210 176 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 CA7P43166 264 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 RAD52P43351 418 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 BCAP31P51572 246 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 GPM6AP51674 278 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 CASP6P55212 293 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 DYRK1AQ13627 763 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 RSU1Q15404 277 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 CDNFQ49AH0 187 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 TMEM255AQ5JRV8 349 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 PCSK4Q6UW60 755 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 C22orf34Q6ZV56 151 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 DUSP18Q8NEJ0 188 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 OR51T1Q8NGJ9 327 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 KLF14Q8TD94 323 aaPredicted RBP14.46□□□□□ -0.1
CLN3-252ENST00000636907 OR5P3Q8WZ94 311 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 SEH1LQ96EE3 360 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 MARS2Q96GW9 593 aaKnown RBP14.46□□□□□ -0.1
CLN3-252ENST00000636907 C7orf50Q9BRJ6 194 aaKnown RBP14.46□□□□□ -0.1
CLN3-252ENST00000636907 SELENOIQ9C0D9 397 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 NLKQ9UBE8 527 aa14.46□□□□□ -0.1
CLN3-252ENST00000636907 PRR14LQ5THK1 2151 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 SULT1C2O00338 296 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 HTR3BO95264 441 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 GNB3P16520 340 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 CA6P23280 308 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 TMEM50BP56557 158 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 PSG7Q13046 419 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 FAM189A2Q15884 450 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 ALKBH6Q3KRA9 238 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 UNQ6126/PRO20091Q6UXV3 157 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 FAM89BQ8N5H3 189 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 PXT1Q8NFP0 134 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 OR56B1Q8NGI3 324 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 OR5A2Q8NGI9 324 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 HIST1H2AAQ96QV6 131 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 TM2D1Q9BX74 207 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 BCL2L14Q9BZR8 327 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 SCPEP1Q9HB40 452 aa14.45□□□□□ -0.1
CLN3-252ENST00000636907 SHANK1Q9Y566 2161 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 CENPXA8MT69 81 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 ZNF732B4DXR9 585 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 MT-ND4P03905 459 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 LPLP06858 475 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 GSTT2BP0CG30 244 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 SLC6A1P30531 599 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 AP3S2P59780 193 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 SNTB2Q13425 540 aaKnown RBP14.44□□□□□ -0.1
CLN3-252ENST00000636907 C3orf36Q3SXR2 165 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 PLAC9Q5JTB6 97 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 ZNF611Q8N823 705 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 OR51F2Q8NH61 342 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 CYYR1Q96J86 154 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 HRASLSQ9HDD0 168 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 OSGIN2Q9Y236 505 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 ATRXP46100 2492 aa14.44□□□□□ -0.1
CLN3-252ENST00000636907 FOXI3A8MTJ6 420 aaPredicted RBP14.43□□□□□ -0.1
CLN3-252ENST00000636907 IQCF6A8MYZ5 107 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 C16orf97H3BN30 126 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 ERVH48-1M5A8F1 160 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 PFDN1O60925 122 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 ZNF780AO75290 641 aaPredicted RBP14.43□□□□□ -0.1
CLN3-252ENST00000636907 CSTBP04080 98 aaKnown RBP14.43□□□□□ -0.1
CLN3-252ENST00000636907 MELTFP08582 738 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 SELEP16581 610 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 HAAOP46952 286 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 PCGF3Q3KNV8 242 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 PLA1AQ53H76 456 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 SEZ6L2Q6UXD5 910 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 CADM3Q8N126 398 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms