RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 QDPRP09417 244 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 ZNF43P17038 809 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 DTYMKP23919 212 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 P2RY1P47900 373 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 PPT1P50897 306 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 GUK1Q16774 197 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 DEFB133Q30KQ1 61 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 C1orf189Q5VU69 101 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 HIST2H3AQ71DI3 136 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 ANKRD37Q7Z713 158 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 POC1BQ8TC44 478 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 SOX7Q9BT81 388 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 SUCNR1Q9BXA5 334 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 PCED1AQ9H1Q7 454 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 PLA2G2EQ9NZK7 142 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 HSF4Q9ULV5 492 aa14.28□□□□□ -0.12
SHMT2-231ENST00000557433 C7orf77A4D0Y5 90 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 C2orf72A6NCS6 295 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 STMND1H3BQB6 276 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 SGCEO43556 437 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 ZNF44P15621 663 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 CDAP32320 146 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 EIF1P41567 113 aaKnown RBP14.27□□□□□ -0.12
SHMT2-231ENST00000557433 IL13RA2Q14627 380 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 SYT13Q7L8C5 426 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 FOXRED2Q8IWF2 684 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 GJC3Q8NFK1 279 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 OR1J1Q8NGS3 322 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 SECTM1Q8WVN6 248 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 ZNF501Q96CX3 271 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-231ENST00000557433 NKX2-4Q9H2Z4 354 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 ZNF701Q9NV72 531 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-231ENST00000557433 ANXA10Q9UJ72 324 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 ATXN7L1Q9ULK2 861 aaPredicted RBP14.27□□□□□ -0.12
SHMT2-231ENST00000557433 B3GALT1Q9Y5Z6 326 aa14.27□□□□□ -0.12
SHMT2-231ENST00000557433 EXPH5Q8NEV8 1989 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 IGHV1OR15-9A0A0B4J2B8 117 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 AQP7P3A6NL99 342 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 DHRS7CA6NNS2 312 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 SERPINA2P20848 420 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 MSR1P21757 451 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 MAS1LP35410 378 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 OR1D5P58170 312 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 MFAP5Q13361 173 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 SMAD4Q13485 552 aaKnown RBP14.27□□□□□ -0.13
SHMT2-231ENST00000557433 SMAD2Q15796 467 aaKnown RBP14.27□□□□□ -0.13
SHMT2-231ENST00000557433 MIDNQ504T8 468 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 AWAT1Q58HT5 328 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 CRIP3Q6Q6R5 217 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 RABEPKQ7Z6M1 372 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 STT3BQ8TCJ2 826 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 ZNF160Q9HCG1 818 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 NECAP2Q9NVZ3 263 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 PLEKHJ1Q9NW61 149 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 LSM5Q9Y4Y9 91 aaKnown RBP14.27□□□□□ -0.13
SHMT2-231ENST00000557433 ADAMTS9Q9P2N4 1935 aa14.27□□□□□ -0.13
SHMT2-231ENST00000557433 METTL12A8MUP2 240 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 H7C1Q1 480 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 FABP1P07148 127 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 ZNF806P0C7X5 589 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 FCGR2AP12318 317 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 SLC35A1P78382 337 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 RHBDD2Q6NTF9 364 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 PLXDC2Q6UX71 529 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 FOXL2NBQ6ZUU3 175 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 C1QL2Q7Z5L3 287 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 FAM219AQ8IW50 185 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 Q96M66 194 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 SCRT1Q9BWW7 348 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 NAA60Q9H7X0 242 aa14.26□□□□□ -0.13
SHMT2-231ENST00000557433 PHF3Q92576 2039 aaKnown RBP14.25□□□□□ -0.13
SHMT2-231ENST00000557433 HEXBP07686 556 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 OR5H8P0DN80 308 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 ZNF14P17017 642 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-231ENST00000557433 RAB5AP20339 215 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 LMO1P25800 156 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 CAMLGP49069 296 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 C10orf128Q5T292 105 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 GALNTL5Q7Z4T8 443 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 C1QL4Q86Z23 238 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 NANPQ8TBE9 248 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 TCTEX1D2Q8WW35 142 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 MRPL24Q96A35 216 aaKnown RBP14.25□□□□□ -0.13
SHMT2-231ENST00000557433 SPSB1Q96BD6 273 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 LYZL4Q96KX0 146 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 DUSP15Q9H1R2 295 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-231ENST00000557433 FGF21Q9NSA1 209 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 S100PP25815 95 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 HIST1H3AP68431 136 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 UBE2V2Q15819 145 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 HIST2H3PS2Q5TEC6 136 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 CARD17Q5XLA6 110 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 RPUSD3Q6P087 351 aaKnown RBP14.25□□□□□ -0.13
SHMT2-231ENST00000557433 C16orf47Q6ZP98 133 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-231ENST00000557433 TSTD1Q8NFU3 115 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 OR8G5Q8NG78 346 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 NTNG2Q96CW9 530 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 ANGPTL4Q9BY76 406 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 METTL9Q9H1A3 318 aa14.25□□□□□ -0.13
SHMT2-231ENST00000557433 SLC35B3Q9H1N7 401 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms