RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 WIPF2Q8TF74 440 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 THEM6Q8WUY1 208 aa12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 PPP1R14AQ96A00 147 aa12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 SDSLQ96GA7 329 aa12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 NKX3-1Q99801 234 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 RGCCQ9H4X1 137 aa12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 ZNF281Q9Y2X9 895 aa12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 SF3B6Q9Y3B4 125 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 SAMHD1Q9Y3Z3 626 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 LRP12Q9Y561 859 aa12.52□□□□□ -0.41
CLSTN3-213ENST00000541953 SYNGR1O43759 233 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 ALX3O95076 343 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 BLVRAP53004 296 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 ZBTB37Q5TC79 503 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 TMEM200BQ69YZ2 307 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 PLBD1Q6P4A8 553 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 ZNF782Q6ZMW2 699 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 TRPM8Q7Z2W7 1104 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 OR10G2Q8NGC3 310 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 OR4M1Q8NGD0 313 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 OR2T6Q8NHC8 308 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 AQP3Q92482 292 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 CLPTM1LQ96KA5 538 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 TTTY10Q9BZA0 68 aa12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 RANBP3Q9H6Z4 567 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 AURKAIP1Q9NWT8 199 aaPredicted RBP12.51□□□□□ -0.41
CLSTN3-213ENST00000541953 TRBV23-1A0A0A0MS06 115 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 MTRF1O75570 445 aaKnown RBP12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 APOC1P02654 83 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 TMEM95Q3KNT9 176 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 OR2T5Q6IEZ7 315 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 HAGHLQ6PII5 290 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 ACP7Q6ZNF0 438 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 SHFQ7M4L6 423 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 THAP5Q7Z6K1 395 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 TMEM219Q86XT9 240 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 OR5D13Q8NGL4 314 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 OR2T29Q8NH02 315 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 MRAPQ8TCY5 172 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 FEVQ99581 238 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 CITED2Q99967 270 aaPredicted RBP12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 FAM206AQ9NX38 181 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 ACTR3BQ9P1U1 418 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 TAGLN3Q9UI15 199 aa12.5□□□□□ -0.41
CLSTN3-213ENST00000541953 DSCAML1Q8TD84 2053 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 RFPL4AA6NLU0 287 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 RFPL4AL1F8VTS6 287 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 IGLV3-1P01715 115 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 FAHP16930 419 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 CAPZA1P52907 286 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 DLX6P56179 175 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 GNG3P63215 75 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 MS4A2Q01362 244 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 MFGE8Q08431 387 aaPredicted RBP12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 BLMHQ13867 455 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 CEACAM21Q3KPI0 293 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 KRT74Q7RTS7 529 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 HS3ST5Q8IZT8 346 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 FTMTQ8N4E7 242 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 OR5K1Q8NHB7 308 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 TEX47Q8TBZ9 253 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 PHF21AQ96BD5 680 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 OR5M11Q96RB7 305 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 NIPAL2Q9H841 368 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 REEP1Q9H902 201 aa12.49□□□□□ -0.41
CLSTN3-213ENST00000541953 FAM90A8PA6NJQ4 464 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 H3BN98 237 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 FBXO24O75426 580 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 PIPP12273 146 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 ALOX5APP20292 161 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 SLC2A5P22732 501 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 RPL31P62899 125 aaKnown RBP12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 GINS1Q14691 196 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 AANATQ16613 207 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 LCN8Q6JVE9 175 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 CD300LDQ6UXZ3 194 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 MOB3CQ70IA8 216 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 OR51E1Q8TCB6 317 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 CDCA4Q9BXL8 241 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 NPFFR1Q9GZQ6 430 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 FAM234AQ9H0X4 552 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 ABCB9Q9NP78 766 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 GPR84Q9NQS5 396 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 COPS3Q9UNS2 423 aa12.48□□□□□ -0.41
CLSTN3-213ENST00000541953 A6NDX4 124 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 MRPL3P09001 348 aaKnown RBP12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 SNCBQ16143 134 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 PLCXD3Q63HM9 321 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 C11orf88Q6PI97 169 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 TCF23Q7RTU1 214 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 CPOQ8IVL8 374 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 Q8N2B8 174 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 ZNF454Q8N9F8 522 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 POC1AQ8NBT0 407 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 FAM81AQ8TBF8 368 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 R3HDM4Q96D70 268 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 TEAD3Q99594 435 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 MAGIXQ9H6Y5 334 aa12.47□□□□□ -0.41
CLSTN3-213ENST00000541953 TCF19Q9Y242 345 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms