RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 PUSL1Q8N0Z8 303 aaKnown RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 ZIC4Q8N9L1 334 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 OR2AE1Q8NHA4 323 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 EMG1Q92979 244 aaKnown RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 MR1Q95460 341 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 ARL11Q969Q4 196 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 CLDN23Q96B33 292 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 SGK3Q96BR1 496 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 IMMP1LQ96LU5 166 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 AQP10Q96PS8 301 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 TM2D1Q9BX74 207 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 ANGPTL4Q9BY76 406 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 TMEM231Q9H6L2 316 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 WDR54Q9H977 334 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 GPR173Q9NS66 373 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 DKKL1Q9UK85 242 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 LOC102723996A0A087X1L8 192 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 A0A0J9YW62 118 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 FIGNL2A6NMB9 653 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 ZNF705EA8MWA4 302 aaPredicted RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 ANGPTL7O43827 346 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 MTRF1O75570 445 aaKnown RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 VAMP5O95183 116 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 SERPINA5P05154 406 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 FGF5P12034 268 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 COX6A1P12074 109 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 ACKR3P25106 362 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 MTCP1P56278 107 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 HIST1H3AP68431 136 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 HIST2H3PS2Q5TEC6 136 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 FOXL2NBQ6ZUU3 175 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 HIST2H3AQ71DI3 136 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 TMEM156Q8N614 296 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 SEMA6DQ8NFY4 1073 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 RHBDD1Q8TEB9 315 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 SPTSSAQ969W0 71 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 ZNF2Q9BSG1 426 aaPredicted RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 PCDHB16Q9NRJ7 776 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 ZNF581Q9P0T4 197 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 FOXD3Q9UJU5 478 aaPredicted RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 C14orf166Q9Y224 244 aaKnown RBP10.32□□□□□ -0.76
CD44-209ENST00000433892 PCDHGA1Q9Y5H4 931 aa10.32□□□□□ -0.76
CD44-209ENST00000433892 TRIOBPQ9H2D6 2365 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 KLF7O75840 302 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 IFNA2P01563 188 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 ZNF133P52736 654 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 IL15RAQ13261 267 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 EIF3IQ13347 325 aaKnown RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 PABPC1L2AQ5JQF8 200 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 MAML2Q8IZL2 1156 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 SVBPQ8N300 66 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 OR4A4PQ8NGN8 299 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 IFI44Q8TCB0 444 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 NAA11Q9BSU3 229 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 FAAP24Q9BTP7 215 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 SRXN1Q9BYN0 137 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 SLC5A7Q9GZV3 580 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 NXT1Q9UKK6 140 aaKnown RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 HS3ST3B1Q9Y662 390 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 FAM230AA0A1W2PPH8 454 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 F8W036 122 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 MSTNO14793 375 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 SPRY1O43609 319 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 ZNF205O95201 554 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 F12P00748 615 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 KLK3P07288 261 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 PET100P0DJ07 73 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 CCL4P13236 92 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 ZNF84P51523 738 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 SSR4P51571 173 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 RRADP55042 308 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 BLOC1S1P78537 153 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 RBM39Q14498 530 aaKnown RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 CCDC157Q569K6 752 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 ZNF468Q5VIY5 522 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 RPL7L1Q6DKI1 246 aaKnown RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 RPUSD3Q6P087 351 aaKnown RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 HRH4Q9H3N8 390 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 LPAR3Q9UBY5 353 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 ZNF629Q9UEG4 869 aaPredicted RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 PURGQ9UJV8 347 aaKnown RBP10.31□□□□□ -0.76
CD44-209ENST00000433892 SIT1Q9Y3P8 196 aa10.31□□□□□ -0.76
CD44-209ENST00000433892 RCC1P18754 421 aaPredicted RBP10.3□□□□□ -0.76
CD44-209ENST00000433892 RBMXP38159 391 aaKnown RBP10.3□□□□□ -0.76
CD44-209ENST00000433892 IL11RAQ14626 422 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 SURF2Q15527 256 aaPredicted RBP10.3□□□□□ -0.76
CD44-209ENST00000433892 STK11Q15831 433 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 EXT1Q16394 746 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 TAF9Q16594 264 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 IAH1Q2TAA2 248 aaPredicted RBP10.3□□□□□ -0.76
CD44-209ENST00000433892 MST1LQ2TV78 715 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 LDLRAD3Q86YD5 345 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 SULF2Q8IWU5 870 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 NAXEQ8NCW5 288 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 SLC39A7Q92504 469 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 NAT6Q93015 286 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 Q96M66 194 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 ZNF700Q9H0M5 742 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 TLNRD1Q9H1K6 362 aa10.3□□□□□ -0.76
CD44-209ENST00000433892 TREM1Q9NP99 234 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms