RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 SPINK14Q6IE38 97 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 C17orf47Q8NEP4 570 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 CADM4Q8NFZ8 388 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 HGDQ93099 445 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 CIB3Q96Q77 187 aaPredicted RBP10.24□□□□□ -0.77
USP53-201ENST00000274030 ZNF251Q9BRH9 671 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 FOXJ3Q9UPW0 622 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 C3orf80F5H4A9 247 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 G3V3Q6 166 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 CDC42EP2O14613 210 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 NDUFB3O43676 98 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 METTL15P1P0C7V9 234 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 DHODHQ02127 395 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 TOMM34Q15785 309 aaPredicted RBP10.24□□□□□ -0.77
USP53-201ENST00000274030 TMEM229BQ8NBD8 167 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 PPIL1Q9Y3C6 166 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 TMEM272A0A1B0GTI8 110 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 GPR31O00270 319 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 OR2J3O76001 311 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 ZNF528Q3MIS6 628 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 ZNF683Q8IZ20 524 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 KCNK15Q9H427 330 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 CYSLTR2Q9NS75 346 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 WBP1LQ9NX94 342 aa10.24□□□□□ -0.77
USP53-201ENST00000274030 TMEM30CPA0ZSE6 113 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 OPN1MWP04001 364 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 OPN1MW2P0DN77 364 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 OPN1MW3P0DN78 364 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 ZNF17P17021 662 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 BPIFB3P59826 476 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 TAGLNQ01995 201 aaKnown RBP10.23□□□□□ -0.77
USP53-201ENST00000274030 SLC38A6Q8IZM9 456 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 LYG1Q8N1E2 194 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 AKR1E2Q96JD6 320 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 C19orf43Q9BQ61 176 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 ARL2-SNX15V9GYD0 113 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 ZNF320A2RRD8 509 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 IL9P15248 144 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 CTLA4P16410 223 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 OR3A4PP47883 348 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 MICBQ29980 383 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 Q7L0L9 218 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 GPBAR1Q8TDU6 330 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 SLIRPQ9GZT3 109 aaKnown RBP10.23□□□□□ -0.77
USP53-201ENST00000274030 TIMM9Q9Y5J7 89 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 MTCH2Q9Y6C9 303 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 ZNF318Q5VUA4 2279 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 SPTA1P02549 2419 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 FCGR3BO75015 233 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 LIMS3P0CW19 117 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 LIMS4P0CW20 117 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 LRRC10Q5BKY1 277 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 C1QL3Q5VWW1 255 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 XAF1Q6GPH4 301 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 ACSM6Q6P461 480 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 CCDC190Q86UF4 302 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 DOK1Q99704 481 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 NDFIP1Q9BT67 221 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 PSG11Q9UQ72 335 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 FAM186AA6NE01 2351 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 ADAM10O14672 748 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 RBP4P02753 201 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 CRYBB2P43320 205 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 RPS4XP62701 263 aaKnown RBP10.23□□□□□ -0.77
USP53-201ENST00000274030 IL11RAQ14626 422 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 RAB35Q15286 201 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 C4orf45Q96LM5 186 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 SEC16AO15027 2179 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 A0A1W2PRD5 423 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 A0A1W2PRF3 423 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 A0A1W2PRM7 423 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 PTGFRP43088 359 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 C3AR1Q16581 482 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 NCR3LG1Q68D85 454 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 TREM2Q9NZC2 230 aa10.23□□□□□ -0.77
USP53-201ENST00000274030 CRYABP02511 175 aaKnown RBP10.22□□□□□ -0.77
USP53-201ENST00000274030 CD96P40200 585 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 CDC20Q12834 499 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 C11orf42Q8N5U0 333 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 MBD1Q9UIS9 605 aaPredicted RBP10.22□□□□□ -0.77
USP53-201ENST00000274030 KIF13AQ9H1H9 1805 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 HPP00738 406 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 SULT1A3P0DMM9 295 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 SULT1A4P0DMN0 295 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 MVDP53602 400 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 SSX1Q16384 188 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 PNLIPRP3Q17RR3 467 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 OR2T6Q8NHC8 308 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 MED30Q96HR3 178 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 ZFP64Q9NPA5 681 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 ICAM5Q9UMF0 924 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 LAMP3Q9UQV4 416 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 ADAMTSL3P82987 1691 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 TIGD3Q6B0B8 471 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 OR2A2Q6IF42 318 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 HES4Q9HCC6 221 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 WNT16Q9UBV4 365 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 BCL2L11O43521 198 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 SPINK4O60575 86 aa10.22□□□□□ -0.77
USP53-201ENST00000274030 MBP02144 154 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms