RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 IGHV4-30-2A0A087WSY4 118 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 KIR2DS1A0A191URI9 304 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 SMIM28A0A1B0GU29 152 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 ZNF233A6NK53 670 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 ZNF724A8MTY0 619 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 E9PAM4 449 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 BIRC5O15392 142 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 LINC01565O15544 149 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 ENSAO43768 121 aaKnown RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 CDC40O60508 579 aaKnown RBP eCLIP3.8□□□□□ -1.8
CD44-220ENST00000525688 DUS4LO95620 317 aaKnown RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 LSM8O95777 96 aaKnown RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 IFNA16P05015 189 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 C2P06681 752 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 GUSBP08236 651 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 CCDC166P0CW27 439 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 IGFBP3P17936 291 aaPredicted RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 FGF9P31371 208 aaPredicted RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 SLCO1A2P46721 670 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 SSR4P51571 173 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 RIDAP52758 137 aaKnown RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 STC1P52823 247 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 CLDN12P56749 244 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 RPL8P62917 257 aaKnown RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 UNC119Q13432 240 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 KRR1Q13601 381 aaKnown RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 GGTLC2Q14390 218 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 SMCO1Q147U7 214 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 KIR2DS1Q14954 304 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 CD226Q15762 336 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 NDUFA5Q16718 116 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 VWA2Q5GFL6 755 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OR10J3Q5JRS4 329 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 TEX30Q5JUR7 227 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 CPTPQ5TA50 214 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OR8G2PQ6IF36 304 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 MED27Q6P2C8 311 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 GDPGP1Q6ZNW5 385 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 BHLHA9Q7RTU4 235 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 LRRTM1Q86UE6 522 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 LHFPL3Q86UP9 236 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 DAW1Q8N136 415 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 BPIFB2Q8N4F0 458 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 WDSUB1Q8N9V3 476 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 LINC00301Q8NCQ3 95 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 ZNF740Q8NDX6 193 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 DUSP18Q8NEJ0 188 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 PRSS33Q8NF86 280 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OR1M1Q8NGA1 313 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OR52B6Q8NGF0 335 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OR51D1Q8NGF3 324 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OR11L1Q8NGX0 322 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OR5B3Q8NH48 314 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OR10J5Q8NHC4 309 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 FAM45AQ8TCE6 357 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 MCOLN3Q8TDD5 553 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 MRPS31Q92665 395 aaKnown RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 SMIM19Q96E16 107 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 ATXN7L3BQ96GX2 97 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 OPRPNQ99935 248 aaPredicted RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 HOPXQ9BPY8 73 aaPredicted RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 TMEM109Q9BVC6 243 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 DDA1Q9BW61 102 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 DSN1Q9H410 356 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 TMEM38AQ9H6F2 299 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 UBE2ZQ9H832 354 aaPredicted RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 RDH14Q9HBH5 336 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 TMEM27Q9HBJ8 222 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 SPANXB1Q9NS25 103 aaPredicted RBP3.8□□□□□ -1.8
CD44-220ENST00000525688 THYN1Q9P016 225 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 IL17CQ9P0M4 197 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 MUTYHQ9UIF7 546 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 COPS3Q9UNS2 423 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 MYO9BQ13459 2157 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 NOTCH4Q99466 2003 aa3.8□□□□□ -1.8
CD44-220ENST00000525688 BDP1A6H8Y1 2624 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 A0A1B0GV72 72 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 A0A1B0GW55 424 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 EPOPA6NHQ4 379 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 C5orf67F2Z3F1 127 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 F5H5T6 163 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 CDC7O00311 574 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 CXCR6O00574 342 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 CCL21O00585 134 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 MRPS12O15235 138 aaKnown RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 SNAP91O60641 907 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 EEDO75530 441 aaKnown RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 ATP6V1G2O95670 118 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 KRT75O95678 551 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 BCHEP06276 602 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 WNT2P09544 360 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 ACSM4P0C7M7 580 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 ZDHHC11BP0C7U3 371 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 DUX4L2P0CJ85 424 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 DUX4L3P0CJ86 424 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 DUX4L4P0CJ87 422 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 DUX4L5P0CJ88 424 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 DUX4L6P0CJ89 424 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 DUX4L7P0CJ90 424 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 LIMS3P0CW19 117 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms