RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ATP1B2P14415 290 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 HIST1H2ADP20671 130 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 BMP5P22003 454 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 GLP1RP43220 463 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 PRLHRP49683 370 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 GEMP55040 296 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 BIDP55957 195 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 UBE2MP61081 183 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SNRPD1P62314 119 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DLK1P80370 383 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 MRPS34P82930 218 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RHOGP84095 191 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RNPS1Q15287 305 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ZIC1Q15915 447 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM241Q24JQ0 296 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ODF4Q2M2E3 257 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 C10orf91Q5T1B1 145 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 PMS2CLQ68D20 193 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 HIST2H2AA3Q6FI13 130 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 MRGPRGQ86SM5 289 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 LAS2Q8IYD9 372 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC22A15Q8IZD6 547 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR8I2Q8N0Y5 310 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 MUC15Q8N387 334 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 CBR4Q8N4T8 237 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 PARP16Q8N5Y8 322 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM217Q8N7C4 229 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ARL14EPQ8N8R7 260 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RNF149Q8NC42 400 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 TSTD1Q8NFU3 115 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR10AD1Q8NGE0 317 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR4D11Q8NGI4 311 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR13J1Q8NGT2 312 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 GPR119Q8TDV5 335 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SMAP2Q8WU79 429 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SPRYD4Q8WW59 207 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 BAALCQ8WXS3 180 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 UCN3Q969E3 161 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 APH1AQ96BI3 265 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 CENPNQ96H22 339 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 LOXL4Q96JB6 756 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 IL17FQ96PD4 163 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 MS4A4EQ96PG1 132 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 MARVELD1Q9BSK0 173 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ABHD14AQ9BUJ0 271 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ZBTB20Q9HC78 741 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RBFOX1Q9NWB1 397 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ANKRD10Q9NXR5 420 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DUX4Q9UBX2 424 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 CLN8Q9UBY8 286 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SH2B3Q9UQQ2 575 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 TRAPPC4Q9Y296 219 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ETV7Q9Y603 341 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 A0A1B0GTI1 187 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM269A0A1B0GVZ9 245 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ATP6AP2A0A1C7CYW4 349 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF705EA8MWA4 302 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 FABP7O15540 132 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 LINC01565O15544 149 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ENTPD6O75354 484 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 FOXH1O75593 365 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 TYMSP04818 313 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 NPBWR1P48145 328 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DNASE1L1P49184 302 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DAP3P51398 398 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 CCL11P51671 97 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 PLCXD2Q0VAA5 305 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SMAGPQ0VAQ4 97 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ST3GAL3Q11203 375 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 EBPQ15125 230 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SNAI3Q3KNW1 292 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 TTLL9Q3SXZ7 439 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 POM121L1PQ3SYA9 428 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 LGALSLQ3ZCW2 172 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 MORN2Q502X0 79 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RABL3Q5HYI8 236 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RIF1Q5UIP0 2472 aaKnown RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 TMEM225Q6GV28 225 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 IL17RELQ6ZVW7 336 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 GALNT16Q8N428 558 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF808Q8N4W9 903 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 INO80EQ8NBZ0 244 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR7A2PQ8NGA2 310 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR52B6Q8NGF0 335 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR52L1Q8NGH7 329 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR1N2Q8NGR9 330 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR13G1Q8NGZ3 307 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 OR51Q1Q8NH59 317 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 Q8WTZ3 238 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ASB10Q8WXI3 467 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF689Q96CS4 500 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 DNAJC19Q96DA6 116 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 LGALS12Q96DT0 336 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 GALNT14Q96FL9 552 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 PECRQ9BY49 303 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 RNF121Q9H920 327 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ASAH2Q9NR71 780 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SMCO4Q9NRQ5 59 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 SLC7A10Q9NS82 523 aa4.19□□□□□ -1.74
CCDC88A-209ENST00000456975 ZNF107Q9UII5 783 aaPredicted RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms