RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RAB35Q15286 201 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 TIGITQ495A1 244 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 OR8U1Q8NH10 309 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 ARHGAP5-AS1Q96IT6 56 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 MOGAT1Q96PD6 335 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 TXN2Q99757 166 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 USB1Q9BQ65 265 aaKnown RBP9.62□□□□□ -0.87
CD44-201ENST00000263398 ZPBPQ9BS86 351 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 ZNF275Q9NSD4 429 aaPredicted RBP9.62□□□□□ -0.87
CD44-201ENST00000263398 UTRNP46939 3433 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 IGHV1OR21-1A0A087WYE8 117 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 RER1O15258 196 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 HYAL3O43820 417 aaPredicted RBP9.62□□□□□ -0.87
CD44-201ENST00000263398 ZIC2O95409 532 aaPredicted RBP9.62□□□□□ -0.87
CD44-201ENST00000263398 FABP1P07148 127 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 FAM157BP0CG42 384 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 PTGFRP43088 359 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 AGFG1P52594 562 aaKnown RBP9.62□□□□□ -0.87
CD44-201ENST00000263398 SSTP61278 116 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 CCL7P80098 99 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 HYAL1Q12794 435 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 IRF3Q14653 427 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 PHYHD1Q5SRE7 291 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 ZNF705AQ6ZN79 300 aaPredicted RBP9.62□□□□□ -0.87
CD44-201ENST00000263398 Q7L0L9 218 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 UBE3DQ7Z6J8 389 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 SKA3Q8IX90 412 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 UBALD2Q8IYN6 164 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 OR1L3Q8NH93 324 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 SHISA8B8ZZ34 492 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 DHRS3O75911 302 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 H3F3AP84243 136 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 EIF4EBP2Q13542 120 aaPredicted RBP9.62□□□□□ -0.87
CD44-201ENST00000263398 PWWP2BQ6NUJ5 590 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 LRRTM1Q86UE6 522 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 SLC39A7Q92504 469 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 PLA2G2FQ9BZM2 168 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 FAM60AQ9NP50 221 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 TMED3Q9Y3Q3 217 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 V9GYH0 126 aa9.62□□□□□ -0.87
CD44-201ENST00000263398 HMSDA8MTL9 139 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 OR10J4P0C629 311 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 DEFA4P12838 97 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 MYF5P13349 255 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 GZMMP51124 257 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 BPIFCQ8NFQ6 507 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 OR10G3Q8NGC4 313 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 CLEC18AA5D8T8 446 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 RNASEK-C17orf49H0YIS7 233 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 CTDSPLO15194 276 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 UBE2G1P62253 170 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 RAC1P63000 192 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 ABI3BPQ7Z7G0 1075 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 LSMEM1Q8N8F7 131 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 ZNF321PQ8N8H1 164 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 CLEC18CQ8NCF0 446 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 ZNF355PQ9NSJ1 428 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 PROCRQ9UNN8 238 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 RCL1Q9Y2P8 373 aaKnown RBP9.61□□□□□ -0.87
CD44-201ENST00000263398 CST7O76096 145 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 DUS4LO95620 317 aaKnown RBP9.61□□□□□ -0.87
CD44-201ENST00000263398 GPANK1O95872 356 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 RRASP10301 218 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 RFC3P40938 356 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 DMWDQ09019 674 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 PJVKQ0ZLH3 352 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 SP6Q3SY56 376 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 RNF212Q495C1 297 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 SIGIRRQ6IA17 410 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 ADPRHL1Q8NDY3 354 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 CPEB3Q8NE35 698 aaKnown RBP9.61□□□□□ -0.87
CD44-201ENST00000263398 DEFB108BQ8NET1 73 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 PTP4A1Q93096 173 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 PINX1Q96BK5 328 aaKnown RBP9.61□□□□□ -0.87
CD44-201ENST00000263398 CMBLQ96DG6 245 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 GABRG3Q99928 467 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 MRM2Q9UI43 246 aaKnown RBP9.61□□□□□ -0.87
CD44-201ENST00000263398 ATG2BQ96BY7 2078 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 H3BP45 60 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 GALR2O43603 387 aaPredicted RBP9.61□□□□□ -0.87
CD44-201ENST00000263398 SFT2D2O95562 160 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 TXNDC12O95881 172 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 ADH4P08319 380 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 CPN1P15169 458 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 FABP6P51161 128 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 GNG3P63215 75 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 PSG6Q00889 435 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 ZNF90Q03938 601 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 PDZD11Q5EBL8 140 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 BTNL8Q6UX41 500 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 PHYHIPLQ96FC7 376 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 ZC3HAV1LQ96H79 300 aaKnown RBP9.61□□□□□ -0.87
CD44-201ENST00000263398 SOX7Q9BT81 388 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 TGIF2Q9GZN2 237 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 OR51I2Q9H344 312 aa9.61□□□□□ -0.87
CD44-201ENST00000263398 RYDENQ9NUL5 291 aaKnown RBP9.61□□□□□ -0.87
CD44-201ENST00000263398 SLC22A20A6NK97 555 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 PLPP3O14495 311 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 ABCD4O14678 606 aa9.6□□□□□ -0.87
CD44-201ENST00000263398 GSTZ1O43708 216 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms