RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SEC22C	Q9BRL7	303 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	ATG5	Q9H1Y0	275 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	SLC2A8	Q9NY64	477 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	TAS2R4	Q9NYW5	299 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	ASH2L	Q9UBL3	628 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	OPN4	Q9UHM6	478 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	KIF25	Q9UIL4	384 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	RAB22A	Q9UL26	194 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	SPTA1	P02549	2419 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	ACACB	O00763	2458 aa		10.22	□□□□□ -0.77
VRK3-223	ENST00000601341	MBD3L4	A6NDZ8	208 aa	Predicted RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	MBD3L3	A6NE82	208 aa	Predicted RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	MBD3L5	A6NJ08	208 aa	Predicted RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341		H3BUI4	141 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	SHOX	O15266	292 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	TSC22D2	O75157	780 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	H2BFM	P0C1H6	154 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	ANXA7	P20073	488 aa	Known RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	TBP	P20226	339 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	GMFB	P60983	142 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	EXOSC2	Q13868	293 aa	Known RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	MEF2D	Q14814	521 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	GUSBP1	Q15486	140 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	EIF2S3L	Q2VIR3	472 aa	Known RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	NRN1L	Q496H8	165 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	PRR30	Q53SZ7	412 aa	Predicted RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	LPCAT3	Q6P1A2	487 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF529	Q6P280	563 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	CORO6	Q6QEF8	472 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	CCDC28A	Q8IWP9	274 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	ELMOD2	Q8IZ81	293 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	OR8H3	Q8N146	312 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	GABRG1	Q8N1C3	465 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	PLPP7	Q8NBV4	271 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	SEH1L	Q96EE3	360 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	ZNF416	Q9BWM5	594 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	GSX2	Q9BZM3	304 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	C12orf49	Q9H741	205 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	TMEM38B	Q9NVV0	291 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	MED9	Q9NWA0	146 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	FAM206A	Q9NX38	181 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	LHFPL6	Q9Y693	200 aa		10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	TPR	P12270	2363 aa	Known RBP	10.21	□□□□□ -0.77
VRK3-223	ENST00000601341	SVIL	O95425	2214 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	SPEN	Q96T58	3664 aa	Known RBP	10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	RPS10-NUDT3	A0A1W2PQS6	291 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	MPC2	O95563	127 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	BPNT1	O95861	308 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	CYB5A	P00167	134 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	CRH	P06850	196 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	M6PR	P20645	277 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	BDKRB2	P30411	391 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	CALCR	P30988	508 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	RBPJ	Q06330	500 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	PLA2G7	Q13093	441 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	ODF4	Q2M2E3	257 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	CLVS2	Q5SYC1	327 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	FBXW9	Q5XUX1	488 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	RTL6	Q6ICC9	239 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	KLHL24	Q6TFL4	600 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	ZNF813	Q6ZN06	617 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	OR2AK2	Q8NG84	335 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	OR6K3	Q8NGY3	331 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	CITED4	Q96RK1	184 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	TMEM138	Q9NPI0	162 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	GDF2	Q9UK05	429 aa	Predicted RBP	10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	GTF2A1L	Q9UNN4	478 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	RHBDD3	Q9Y3P4	386 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	FAM215A	Q9Y5M1	114 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	BSN	Q9UPA5	3926 aa		10.21	□□□□□ -0.78
VRK3-223	ENST00000601341	MCRIP1	C9JLW8	97 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	KDM4B	O94953	1096 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	FARS2	O95363	451 aa	Known RBP	10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	RAB3D	O95716	219 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	IL2RA	P01589	272 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	CD3D	P04234	171 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	CST2	P09228	141 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	VSIG10L2	P0DP72	767 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	PTHLH	P12272	177 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	EDN3	P14138	238 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	B4GALT1	P15291	398 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	TIMP3	P35625	211 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	KIR2DL2	P43627	348 aa	Predicted RBP	10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	SRSF4	Q08170	494 aa	Known RBP	10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	LY6D	Q14210	128 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	ENDOG	Q14249	297 aa	Known RBP	10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	OPCML	Q14982	345 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	BIVM	Q86UB2	503 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	LRRC18	Q8N456	261 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	SLC22A24	Q8N4F4	322 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	CNEP1R1	Q8N9A8	125 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	GJC3	Q8NFK1	279 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	OR51S1	Q8NGJ8	323 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	OR5D14	Q8NGL3	314 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	AQP3	Q92482	292 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	SLAMF6	Q96DU3	332 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	DPCD	Q9BVM2	203 aa	Predicted RBP	10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	BEX1	Q9HBH7	125 aa		10.2	□□□□□ -0.78
VRK3-223	ENST00000601341	CA10	Q9NS85	328 aa		10.2	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms