RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PNLDC1Q8NA58 520 aaKnown RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 FBXO17Q96EF6 278 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ZNF799Q96GE5 643 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ARHGAP5-AS1Q96IT6 56 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 OCSTAMPQ9BR26 566 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 MED9Q9NWA0 146 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 FLVCR1Q9Y5Y0 555 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 A0A0G2JMM0 328 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 A0A1W2PPB8 328 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 A0A1W2PRS3 328 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 KIR3DP1A8MWS1 328 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 APOC1P02654 83 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 P04436 131 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 SLC25A4P12235 298 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ICAM2P13598 275 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ACP1P24666 158 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 RPS18P62269 152 aaKnown RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 RPS27AP62979 156 aaKnown RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 MRPS34P82930 218 aaKnown RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 Q0VFX4 171 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 MICBQ29980 383 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ACTBL2Q562R1 376 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 DMRTC1Q5HYR2 192 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 VAX1Q5SQQ9 334 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 DCAF12Q5T6F0 453 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ZNF660Q6AZW8 331 aaPredicted RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 RGS7BPQ6MZT1 257 aaPredicted RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 C1QL2Q7Z5L3 287 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 SLC51BQ86UW2 128 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ADAD2Q8NCV1 583 aaKnown RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 CCDC54Q8NEL0 328 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 PP6455Q8WZ26 134 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ST8SIA4Q92187 359 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 ZNF837Q96EG3 531 aaPredicted RBP8.84□□□□□ -0.99
VPS53-220ENST00000576149 PHB2Q99623 299 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 CHST5Q9GZS9 411 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 OR10A2Q9H208 303 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 NCOR1P1Q9H4R4 102 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 RDH8Q9NYR8 311 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 PLEK2Q9NYT0 353 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 TCFL5Q9UL49 500 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 PADI1Q9ULC6 663 aa8.84□□□□□ -0.99
VPS53-220ENST00000576149 hCG_1807616A0A1W2PRN6 198 aa8.83□□□□□ -1
VPS53-220ENST00000576149 FOXI3A8MTJ6 420 aaPredicted RBP8.83□□□□□ -1
VPS53-220ENST00000576149 CCSO14618 274 aa8.83□□□□□ -1
VPS53-220ENST00000576149 GOSR1O95249 250 aa8.83□□□□□ -1
VPS53-220ENST00000576149 DUS4LO95620 317 aaKnown RBP8.83□□□□□ -1
VPS53-220ENST00000576149 DBHP09172 617 aa8.83□□□□□ -1
VPS53-220ENST00000576149 FAHP16930 419 aa8.83□□□□□ -1
VPS53-220ENST00000576149 OTX2P32243 289 aa8.83□□□□□ -1
VPS53-220ENST00000576149 H3F3CQ6NXT2 135 aa8.83□□□□□ -1
VPS53-220ENST00000576149 YRDCQ86U90 279 aaKnown RBP8.83□□□□□ -1
VPS53-220ENST00000576149 GGNQ86UU5 652 aa8.83□□□□□ -1
VPS53-220ENST00000576149 OR5D18Q8NGL1 313 aa8.83□□□□□ -1
VPS53-220ENST00000576149 TERB2Q8NHR7 220 aa8.83□□□□□ -1
VPS53-220ENST00000576149 KCNE4Q8WWG9 221 aa8.83□□□□□ -1
VPS53-220ENST00000576149 RBPMSQ93062 196 aaKnown RBP8.83□□□□□ -1
VPS53-220ENST00000576149 FBXW5Q969U6 566 aa8.83□□□□□ -1
VPS53-220ENST00000576149 C10orf35Q96D05 121 aa8.83□□□□□ -1
VPS53-220ENST00000576149 PDCD10Q9BUL8 212 aa8.83□□□□□ -1
VPS53-220ENST00000576149 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.83□□□□□ -1
VPS53-220ENST00000576149 A0A0D9SG52 128 aa8.83□□□□□ -1
VPS53-220ENST00000576149 CEACAM18A8MTB9 384 aa8.83□□□□□ -1
VPS53-220ENST00000576149 AKR1C4P17516 323 aa8.83□□□□□ -1
VPS53-220ENST00000576149 CBX5P45973 191 aa8.83□□□□□ -1
VPS53-220ENST00000576149 FAM209AQ5JX71 171 aa8.83□□□□□ -1
VPS53-220ENST00000576149 C11orf87Q6NUJ2 197 aa8.83□□□□□ -1
VPS53-220ENST00000576149 RFPL4BQ6ZWI9 263 aa8.83□□□□□ -1
VPS53-220ENST00000576149 SLC16A14Q7RTX9 510 aa8.83□□□□□ -1
VPS53-220ENST00000576149 ARRDC1Q8N5I2 433 aa8.83□□□□□ -1
VPS53-220ENST00000576149 OR51T1Q8NGJ9 327 aa8.83□□□□□ -1
VPS53-220ENST00000576149 OR14L1PQ8NHC6 308 aa8.83□□□□□ -1
VPS53-220ENST00000576149 COQ8AQ8NI60 647 aa8.83□□□□□ -1
VPS53-220ENST00000576149 MARCH1Q8TCQ1 289 aa8.83□□□□□ -1
VPS53-220ENST00000576149 NPRL2Q8WTW4 380 aa8.83□□□□□ -1
VPS53-220ENST00000576149 SPTSSAQ969W0 71 aa8.83□□□□□ -1
VPS53-220ENST00000576149 ZNF775Q96BV0 537 aaPredicted RBP8.83□□□□□ -1
VPS53-220ENST00000576149 SEC22AQ96IW7 307 aa8.83□□□□□ -1
VPS53-220ENST00000576149 CYYR1Q96J86 154 aa8.83□□□□□ -1
VPS53-220ENST00000576149 REG4Q9BYZ8 158 aa8.83□□□□□ -1
VPS53-220ENST00000576149 COMMD9Q9P000 198 aa8.83□□□□□ -1
VPS53-220ENST00000576149 PIGLQ9Y2B2 252 aa8.83□□□□□ -1
VPS53-220ENST00000576149 PCDHGA1Q9Y5H4 931 aa8.83□□□□□ -1
VPS53-220ENST00000576149 NCOA6Q14686 2063 aaPredicted RBP8.83□□□□□ -1
VPS53-220ENST00000576149 DMDP11532 3685 aa8.83□□□□□ -1
VPS53-220ENST00000576149 MGMTP16455 207 aa8.82□□□□□ -1
VPS53-220ENST00000576149 TCN2P20062 427 aa8.82□□□□□ -1
VPS53-220ENST00000576149 CRYGSP22914 178 aa8.82□□□□□ -1
VPS53-220ENST00000576149 AVPR2P30518 371 aa8.82□□□□□ -1
VPS53-220ENST00000576149 NTF4P34130 210 aa8.82□□□□□ -1
VPS53-220ENST00000576149 CARD18P57730 90 aa8.82□□□□□ -1
VPS53-220ENST00000576149 TAS2R31P59538 309 aa8.82□□□□□ -1
VPS53-220ENST00000576149 ZNF345Q14585 488 aa8.82□□□□□ -1
VPS53-220ENST00000576149 SNAI3Q3KNW1 292 aa8.82□□□□□ -1
VPS53-220ENST00000576149 CLEC2AQ6UVW9 174 aa8.82□□□□□ -1
VPS53-220ENST00000576149 LHFPL2Q6ZUX7 228 aa8.82□□□□□ -1
VPS53-220ENST00000576149 GPR137CQ8N3F9 429 aa8.82□□□□□ -1
VPS53-220ENST00000576149 KCNRGQ8N5I3 272 aa8.82□□□□□ -1
VPS53-220ENST00000576149 OR52H1Q8NGJ2 320 aa8.82□□□□□ -1
VPS53-220ENST00000576149 LRRC20Q8TCA0 184 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms