RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ANXA5P08758 320 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 UQCRFS1P1P0C7P4 283 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CGB3P0DN86 165 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CGB7P0DN87 165 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 SLC2A3P11169 496 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CBR1P16152 277 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 IL3RAP26951 378 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 STOMP27105 288 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 HTR1DP28221 377 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 MPIP34949 423 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 GGT2P36268 569 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TALDO1P37837 337 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 SLC1A1P43005 524 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TNNT2P45379 298 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR1G1P47890 313 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 SERPINB8P50452 374 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZNF83P51522 516 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CCL23P55773 120 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 KLF3P57682 345 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 VSX2P58304 361 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZNF121P58317 390 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 EIF3EP60228 445 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 STXBP1P61764 594 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 BTN1A1Q13410 526 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 HES1Q14469 280 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 MRPL23Q16540 153 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 KLHL40Q2TBA0 621 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZNF829Q3KNS6 432 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 MAJINQ3KP22 176 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ALKBH6Q3KRA9 238 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 VPS26BQ4G0F5 336 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TPTE2P1Q5T6R2 138 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CPTPQ5TA50 214 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 PRAMEF5Q5TYX0 476 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 PRAMEF20Q5VT98 475 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 PRAMEF6Q5VXH4 476 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 STEAP4Q687X5 459 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TTC19Q6DKK2 380 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 C22orf42Q6IC83 251 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 REEP3Q6NUK4 255 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TMEM220Q6QAJ8 160 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CASC1Q6TDU7 716 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OPN5Q6U736 354 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CD300LGQ6UXG3 332 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZYG11AQ6WRX3 759 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 Q6ZSA8 131 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TCF23Q7RTU1 214 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 MRPL55Q7Z7F7 128 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 PRNTQ86SH4 94 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 SCD5Q86SK9 330 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 FAM228AQ86W67 206 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 HORMAD1Q86X24 394 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 LRRC8AQ8IWT6 810 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CMTM1Q8IZ96 169 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ORMDL3Q8N138 153 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZNF567Q8N184 647 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZCCHC24Q8N2G6 241 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 RPRMLQ8N4K4 120 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CBR4Q8N4T8 237 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 CSGALNACT2Q8N6G5 542 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZNF555Q8NEP9 628 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 SPATA4Q8NEY3 305 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 BPIFCQ8NFQ6 507 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR9K2Q8NGE7 335 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR56A4Q8NGH8 313 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR4D6Q8NGJ1 314 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR9G4Q8NGQ1 327 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR6Q1Q8NGQ2 317 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR13C2Q8NGS9 318 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR52E5Q8NH55 327 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 LYPD6BQ8NI32 183 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZNF420Q8TAQ5 688 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 FAM57AQ8TBR7 257 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ITLN2Q8WWU7 325 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 CDS1Q92903 461 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 STMN2Q93045 179 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 YIPF5Q969M3 257 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 EEF1AKMT3Q96AZ1 226 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 RAD51AP1Q96B01 352 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 HAUS1Q96CS2 278 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TBC1D31Q96DN5 1066 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 UBE2E2Q96LR5 201 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 OR2V2Q96R30 315 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TGS1Q96RS0 853 aaKnown RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 PEBP4Q96S96 227 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZBTB18Q99592 522 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 PDCD1LG2Q9BQ51 273 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 SLC39A3Q9BRY0 314 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 GCOM2Q9BZD3 368 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 UCK2Q9BZX2 261 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ACTR3CQ9C0K3 210 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 SLC7A5P2Q9GIP4 190 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 NT5C3AQ9H0P0 336 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 DUSP21Q9H596 190 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 VSIRQ9H7M9 311 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 ZNF286AQ9HBT8 521 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 MYOZ1Q9NP98 299 aaPredicted RBP0.04□□□□□ -2.4
VPS35-212ENST00000640313 TREX1Q9NSU2 369 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TMEM106BQ9NUM4 274 aa0.04□□□□□ -2.4
VPS35-212ENST00000640313 TMEM38BQ9NVV0 291 aa0.04□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms