RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 TLN2Q9Y4G6 2542 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 DYSFO75923 2080 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 DAPL1A0PJW8 107 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 C5orf63A6NC05 138 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 A6NLC8 198 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 PRR32B1ATL7 298 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 SRSF10O75494 262 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 UBCP0CG48 685 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 DBTP11182 482 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 IL2RGP31785 369 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 LMO4P61968 165 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 MFGE8Q08431 387 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 RIPPLY1Q0D2K3 151 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 SCGB2A2Q13296 93 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 KLHL22Q53GT1 634 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF684Q5T5D7 378 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 DOK3Q7L591 496 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 LRRC28Q86X40 367 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 ZDHHC23Q8IYP9 409 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 ELMOD2Q8IZ81 293 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 GALNT4Q8N4A0 578 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 TMEM186Q96B77 213 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 HIST1H2AAQ96QV6 131 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 TBX5Q99593 518 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 TTTY10Q9BZA0 68 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 SHARPINQ9H0F6 387 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 VCX3BQ9H321 246 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 RNPEPL1Q9HAU8 725 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 GPR84Q9NQS5 396 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 TREM2Q9NZC2 230 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF319Q9P2F9 582 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 RNF7Q9UBF6 113 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 EXOGQ9Y2C4 368 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 LRCH1Q9Y2L9 728 aa12.11□□□□□ -0.47
CCDC88C-207ENST00000554051 MAP1AP78559 2803 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 PPIAL4EA0A075B759 164 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 PPIAL4CA0A0B4J2A2 164 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 A0A0G2JMP0 313 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 A0A0X1KG70 313 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 A0A1B0GVI7 797 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 OR5B21A6NL26 309 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 PPIAL4DF5H284 164 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 H0YAE9 185 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 J3QLI3 93 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 FAM20BO75063 409 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 TTRP02766 147 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 PPIAL4FP0DN26 164 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 CCL1P22362 96 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 ANOS1P23352 680 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 ISL1P61371 349 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 PRDX4Q13162 271 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 MED21Q13503 144 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 ZMYND11Q15326 602 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 LRRC36Q1X8D7 754 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 KRTAP21-3Q3LHN1 58 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 CDONQ4KMG0 1287 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 SPRNQ5BIV9 151 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF691Q5VV52 312 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 LIPNQ5VXI9 398 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 SYS1Q8N2H4 156 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 DHRSXQ8N5I4 330 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 OR4M2Q8NGB6 313 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 OR51E1Q8TCB6 317 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 C10orf35Q96D05 121 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 ITPKCQ96DU7 683 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 LYZL4Q96KX0 146 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 TECTBQ96PL2 329 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 TLNRD1Q9H1K6 362 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 PLEKHA1Q9HB21 404 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 G6PC2Q9NQR9 355 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 UBAP1Q9NZ09 502 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 MIOXQ9UGB7 285 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 GNG8Q9UK08 70 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 PPIAL4AQ9Y536 164 aa12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 YLPM1P49750 1951 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-207ENST00000554051 VPS13CQ709C8 3753 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 ERICH4A6NGS2 130 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 A8MXK9 166 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 J3QRE1 110 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 NDUFA2O43678 99 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 PNPP00491 289 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 HOXB4P17483 251 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 ACKR3P25106 362 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 ELF3P78545 371 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF85Q03923 595 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 SLC34A1Q06495 639 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF404Q494X3 552 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 ESCO2Q56NI9 601 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 PRAMEF6Q5VXH4 476 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 DCDC5Q6ZRR9 648 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 Q6ZSR3 168 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 SSX6Q7RTT6 188 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF420Q8TAQ5 688 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 CYGBQ8WWM9 190 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 OR5P3Q8WZ94 311 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 LGALS12Q96DT0 336 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 POM121Q96HA1 1249 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 ADI1Q9BV57 179 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 JAM3Q9BX67 310 aa12.09□□□□□ -0.47
CCDC88C-207ENST00000554051 BEX2Q9BXY8 128 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms