RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ELMOD2Q8IZ81 293 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 PRSS35Q8N3Z0 413 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 MS4A15Q8N5U1 240 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 IL17RDQ8NFM7 739 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 ZNF420Q8TAQ5 688 aaPredicted RBP10.41□□□□□ -0.74
PTPRF-208ENST00000437607 RAB2BQ8WUD1 216 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 GHSRQ92847 366 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 TMEM203Q969S6 136 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 POM121L2Q96KW2 1035 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 C19orf24Q9BVV8 132 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 FAM192AQ9GZU8 254 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 SHARPINQ9H0F6 387 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 G6PC2Q9NQR9 355 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 FRRS1LQ9P0K9 344 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 CRNNQ9UBG3 495 aaPredicted RBP10.41□□□□□ -0.74
PTPRF-208ENST00000437607 EIF3KQ9UBQ5 218 aaKnown RBP10.41□□□□□ -0.74
PTPRF-208ENST00000437607 SSR3Q9UNL2 185 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 SLC22A13Q9Y226 551 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 ZNF281Q9Y2X9 895 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 ATP23Q9Y6H3 246 aa10.41□□□□□ -0.74
PTPRF-208ENST00000437607 LOC100509620A0A075B734 347 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 IGHV1-18A0A0C4DH31 117 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 ATP6V1G2-DDX39BF2Z307 99 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 XRCC2O43543 280 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 LMX1BO60663 402 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 IGLV1-44P01699 117 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 TTRP02766 147 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 CCL2P13500 99 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 APOBEC3AP31941 199 aaPredicted RBP10.4□□□□□ -0.74
PTPRF-208ENST00000437607 HGFACQ04756 655 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 C3orf36Q3SXR2 165 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 TMEM244Q5VVB8 128 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 UNQ6126/PRO20091Q6UXV3 157 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 MYPOPQ86VE0 399 aaPredicted RBP10.4□□□□□ -0.74
PTPRF-208ENST00000437607 ANKRD13BQ86YJ7 626 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 GPR148Q8TDV2 347 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 RNF166Q96A37 237 aaPredicted RBP10.4□□□□□ -0.74
PTPRF-208ENST00000437607 APOBEC3DQ96AK3 386 aaPredicted RBP10.4□□□□□ -0.74
PTPRF-208ENST00000437607 ISOC1Q96CN7 298 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 ZNF75AQ96N20 296 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 SORCS2Q96PQ0 1159 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 BCL7BQ9BQE9 202 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 CHCHD6Q9BRQ6 235 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 OR51E2Q9H255 320 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 OPA3Q9H6K4 179 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 PLEKHA1Q9HB21 404 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 RSL24D1Q9UHA3 163 aaKnown RBP10.4□□□□□ -0.74
PTPRF-208ENST00000437607 ZNF391Q9UJN7 358 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 HHLA2Q9UM44 414 aa10.4□□□□□ -0.74
PTPRF-208ENST00000437607 A0A0U1RQV5 110 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 P2RY10O00398 339 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 GABRPO00591 440 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 SYT7O43581 403 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 CD2P06729 351 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 CSF3P09919 207 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 OCM2P0CE71 109 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 GALP22466 123 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 CFL1P23528 166 aaKnown RBP10.39□□□□□ -0.75
PTPRF-208ENST00000437607 MYL9P24844 172 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 GZMKP49863 264 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 TMBIM6P55061 237 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 MALLQ13021 153 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 SNAI3Q3KNW1 292 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 FAM120AOSQ5T036 256 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 GDPGP1Q6ZNW5 385 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 RFPL4BQ6ZWI9 263 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 DOK3Q7L591 496 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 OR13C3Q8NGS6 347 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 OR13C5Q8NGS8 318 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 ABHD4Q8TB40 342 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 OR51E1Q8TCB6 317 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 MSI2Q96DH6 328 aaKnown RBP10.39□□□□□ -0.75
PTPRF-208ENST00000437607 C1QTNF5Q9BXJ0 243 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 NAA50Q9GZZ1 169 aaKnown RBP10.39□□□□□ -0.75
PTPRF-208ENST00000437607 RBM38Q9H0Z9 239 aaKnown RBP10.39□□□□□ -0.75
PTPRF-208ENST00000437607 RGCCQ9H4X1 137 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 CHODLQ9H9P2 273 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 DHDHQ9UQ10 334 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 GSTK1Q9Y2Q3 226 aa10.39□□□□□ -0.75
PTPRF-208ENST00000437607 IGHV2OR16-5A0A0B4J2B6 119 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 IGHV4-61A0A0C4DH41 118 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 TRDV1A0A1B0GX56 115 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 H3BSH0 61 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 MTRF1O75570 445 aaKnown RBP10.38□□□□□ -0.75
PTPRF-208ENST00000437607 GATBO75879 557 aaKnown RBP10.38□□□□□ -0.75
PTPRF-208ENST00000437607 CRYAAP02489 173 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 ISG15P05161 165 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 ZNF12P17014 697 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 ZNF20P17024 532 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 SRD5A1P18405 259 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 NR4A1P22736 598 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 NR4A2P43354 598 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 LSM3P62310 102 aaKnown RBP10.38□□□□□ -0.75
PTPRF-208ENST00000437607 FABP5Q01469 135 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 NAAAQ02083 359 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 Q499Y3 187 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 SLC16A12Q6ZSM3 486 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 PRSS45Q7RTY3 260 aa10.38□□□□□ -0.75
PTPRF-208ENST00000437607 MRPL21Q7Z2W9 205 aaKnown RBP10.38□□□□□ -0.75
PTPRF-208ENST00000437607 PAQR4Q8N4S7 273 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms