RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 C8orf34Q49A92 452 aa8.48□□□□□ -1.05
SMCHD1-208ENST00000583344 POP1Q99575 1024 aaKnown RBP8.48□□□□□ -1.05
SMCHD1-208ENST00000583344 FSCN2O14926 492 aa8.47□□□□□ -1.05
SMCHD1-208ENST00000583344 TRPA1O75762 1119 aa8.47□□□□□ -1.05
SMCHD1-208ENST00000583344 PTPRAP18433 802 aa8.47□□□□□ -1.05
SMCHD1-208ENST00000583344 CD68P34810 354 aaPredicted RBP8.47□□□□□ -1.05
SMCHD1-208ENST00000583344 ACAD11Q709F0 780 aa8.47□□□□□ -1.05
SMCHD1-208ENST00000583344 HHIPQ96QV1 700 aa8.47□□□□□ -1.05
SMCHD1-208ENST00000583344 SALL4Q9UJQ4 1053 aa8.47□□□□□ -1.05
SMCHD1-208ENST00000583344 HYAL3O43820 417 aaPredicted RBP8.46□□□□□ -1.06
SMCHD1-208ENST00000583344 CES1P23141 567 aa8.46□□□□□ -1.06
SMCHD1-208ENST00000583344 UBL7Q96S82 380 aaPredicted RBP8.46□□□□□ -1.06
SMCHD1-208ENST00000583344 CHRDQ9H2X0 955 aa8.46□□□□□ -1.06
SMCHD1-208ENST00000583344 POLIQ9UNA4 740 aa8.46□□□□□ -1.06
SMCHD1-208ENST00000583344 DDX3YO15523 660 aaKnown RBP8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 ADAM11O75078 769 aa8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 RPLP1P05386 114 aaKnown RBP8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 PCSK2P16519 638 aa8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 FSTP19883 344 aa8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 MZF1P28698 734 aaPredicted RBP8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 XKR5Q6UX68 686 aa8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 UBASH3BQ8TF42 649 aa8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 FOXD4L4Q8WXT5 416 aaPredicted RBP8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 ADAM19Q9H013 955 aa8.45□□□□□ -1.06
SMCHD1-208ENST00000583344 NFKBIEO00221 500 aa8.44□□□□□ -1.06
SMCHD1-208ENST00000583344 PPP1R15AO75807 674 aaPredicted RBP8.44□□□□□ -1.06
SMCHD1-208ENST00000583344 FAM117BQ6P1L5 589 aa8.44□□□□□ -1.06
SMCHD1-208ENST00000583344 NBPF11Q86T75 865 aa8.44□□□□□ -1.06
SMCHD1-208ENST00000583344 KLHDC7BQ96G42 594 aa8.44□□□□□ -1.06
SMCHD1-208ENST00000583344 KRTAP4-8Q9BYQ9 185 aa8.44□□□□□ -1.06
SMCHD1-208ENST00000583344 DZANK1Q9NVP4 752 aa8.44□□□□□ -1.06
SMCHD1-208ENST00000583344 H3BRJ5 948 aa8.43□□□□□ -1.06
SMCHD1-208ENST00000583344 PHLDB3Q6NSJ2 640 aa8.43□□□□□ -1.06
SMCHD1-208ENST00000583344 KIAA1211Q6ZU35 1233 aa8.43□□□□□ -1.06
SMCHD1-208ENST00000583344 KLHL23Q8NBE8 558 aa8.43□□□□□ -1.06
SMCHD1-208ENST00000583344 TTC16Q8NEE8 873 aa8.43□□□□□ -1.06
SMCHD1-208ENST00000583344 RNF112Q9ULX5 631 aa8.43□□□□□ -1.06
SMCHD1-208ENST00000583344 FAM177BA6PVY3 158 aa8.42□□□□□ -1.06
SMCHD1-208ENST00000583344 AAMPQ13685 434 aa8.42□□□□□ -1.06
SMCHD1-208ENST00000583344 DUOXA2Q1HG44 320 aa8.42□□□□□ -1.06
SMCHD1-208ENST00000583344 ARMC10Q8N2F6 343 aa8.42□□□□□ -1.06
SMCHD1-208ENST00000583344 SEC31BQ9NQW1 1179 aa8.42□□□□□ -1.06
SMCHD1-208ENST00000583344 PDE2AO00408 941 aaPredicted RBP8.41□□□□□ -1.06
SMCHD1-208ENST00000583344 EREGO14944 169 aa8.41□□□□□ -1.06
SMCHD1-208ENST00000583344 ALKBH2Q6NS38 261 aa8.41□□□□□ -1.06
SMCHD1-208ENST00000583344 ANO2Q9NQ90 1003 aa8.41□□□□□ -1.06
SMCHD1-208ENST00000583344 FOXD3Q9UJU5 478 aaPredicted RBP8.41□□□□□ -1.06
SMCHD1-208ENST00000583344 RAXQ9Y2V3 346 aa8.41□□□□□ -1.06
SMCHD1-208ENST00000583344 TNFRSF21O75509 655 aa8.4□□□□□ -1.06
SMCHD1-208ENST00000583344 CABP4P57796 275 aa8.4□□□□□ -1.06
SMCHD1-208ENST00000583344 NLRP12P59046 1061 aa8.4□□□□□ -1.06
SMCHD1-208ENST00000583344 ZNF211Q13398 564 aaPredicted RBP8.4□□□□□ -1.06
SMCHD1-208ENST00000583344 HGSNATQ68CP4 663 aa8.4□□□□□ -1.06
SMCHD1-208ENST00000583344 SLC7A3Q8WY07 619 aa8.4□□□□□ -1.06
SMCHD1-208ENST00000583344 PSMG3-AS1Q96PY0 264 aa8.4□□□□□ -1.06
SMCHD1-208ENST00000583344 CEP41Q9BYV8 373 aa8.4□□□□□ -1.06
SMCHD1-208ENST00000583344 FZD6O60353 706 aa8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 PHACTR2O75167 634 aa8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 ABL1P00519 1130 aa8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 NPR3P17342 541 aa8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 PIP4K2BP78356 416 aa8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 UTP4Q969X6 686 aaKnown RBP8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 OSMRQ99650 979 aa8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 ZKSCAN3Q9BRR0 538 aa8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 SOX13Q9UN79 622 aa8.39□□□□□ -1.07
SMCHD1-208ENST00000583344 TMEM102Q8N9M5 508 aaPredicted RBP8.38□□□□□ -1.07
SMCHD1-208ENST00000583344 SNX29Q8TEQ0 813 aa8.38□□□□□ -1.07
SMCHD1-208ENST00000583344 FAM46AQ96IP4 442 aaKnown RBP8.38□□□□□ -1.07
SMCHD1-208ENST00000583344 CCDC87Q9NVE4 849 aa8.38□□□□□ -1.07
SMCHD1-208ENST00000583344 STOML1Q9UBI4 398 aa8.38□□□□□ -1.07
SMCHD1-208ENST00000583344 DHX15O43143 795 aaKnown RBP8.37□□□□□ -1.07
SMCHD1-208ENST00000583344 FAM13AO94988 1023 aa8.37□□□□□ -1.07
SMCHD1-208ENST00000583344 SSTR4P31391 388 aa8.37□□□□□ -1.07
SMCHD1-208ENST00000583344 WNT8BQ93098 351 aa8.37□□□□□ -1.07
SMCHD1-208ENST00000583344 PMEPA1Q969W9 287 aa8.37□□□□□ -1.07
SMCHD1-208ENST00000583344 LATS2Q9NRM7 1088 aa8.37□□□□□ -1.07
SMCHD1-208ENST00000583344 IGLV1-40P01703 118 aa8.36□□□□□ -1.07
SMCHD1-208ENST00000583344 FKBP4Q02790 459 aaKnown RBP eCLIP8.36□□□□□ -1.07
SMCHD1-208ENST00000583344 NXPE3Q969Y0 559 aa8.36□□□□□ -1.07
SMCHD1-208ENST00000583344 OSGEPQ9NPF4 335 aa8.36□□□□□ -1.07
SMCHD1-208ENST00000583344 MTMR7Q9Y216 660 aa8.36□□□□□ -1.07
SMCHD1-208ENST00000583344 PREPP48147 710 aa8.35□□□□□ -1.07
SMCHD1-208ENST00000583344 SF3B2Q13435 895 aaKnown RBP8.35□□□□□ -1.07
SMCHD1-208ENST00000583344 UVSSAQ2YD98 709 aa8.35□□□□□ -1.07
SMCHD1-208ENST00000583344 VN1R5Q7Z5H4 357 aa8.35□□□□□ -1.07
SMCHD1-208ENST00000583344 C14orf37Q86TY3 774 aa8.35□□□□□ -1.07
SMCHD1-208ENST00000583344 MYRFLQ96LU7 910 aa8.35□□□□□ -1.07
SMCHD1-208ENST00000583344 C7orf69Q9H7B7 122 aa8.35□□□□□ -1.07
SMCHD1-208ENST00000583344 PCMTD2Q9NV79 361 aa8.35□□□□□ -1.07
SMCHD1-208ENST00000583344 HMX2A2RU54 273 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 TGFB1P01137 390 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 EDN3P14138 238 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 USP5P45974 858 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 EHHADHQ08426 723 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 C19orf57Q0VDD7 668 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 PEAR1Q5VY43 1037 aaPredicted RBP8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 SLC51AQ86UW1 340 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 TRIM42Q8IWZ5 723 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 GJD3Q8N144 294 aa8.34□□□□□ -1.07
SMCHD1-208ENST00000583344 ASAP3Q8TDY4 903 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms