RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TIGD6Q17RP2 521 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 WDR25Q64LD2 544 aaPredicted RBP10.87□□□□□ -0.67
LIG1-212ENST00000596549 SFRP4Q6FHJ7 346 aaPredicted RBP10.87□□□□□ -0.67
LIG1-212ENST00000596549 FAHD1Q6P587 224 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 SHFQ7M4L6 423 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 CPOQ8IVL8 374 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 PARP8Q8N3A8 854 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 FAM216AQ8WUB2 273 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 UTP4Q969X6 686 aaKnown RBP10.87□□□□□ -0.67
LIG1-212ENST00000596549 SGK3Q96BR1 496 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 C1orf147Q96MC9 270 aaPredicted RBP10.87□□□□□ -0.67
LIG1-212ENST00000596549 SMURF1Q9HCE7 757 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 BRD7Q9NPI1 651 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 C1orf123Q9NWV4 160 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 RNF7Q9UBF6 113 aa10.87□□□□□ -0.67
LIG1-212ENST00000596549 TENM1Q9UKZ4 2725 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 IGHV3OR16-10A0A075B7F0 116 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 CCDC182A6NF36 153 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 PRR32B1ATL7 298 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 C3orf80F5H4A9 247 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 TRIM77I1YAP6 450 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 TNFRSF13BO14836 293 aaPredicted RBP10.86□□□□□ -0.67
LIG1-212ENST00000596549 PLATP00750 562 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 GRPP07492 148 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 H2BFMP0C1H6 154 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 DAPP51397 102 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 PSMA6P60900 246 aaKnown RBP10.86□□□□□ -0.67
LIG1-212ENST00000596549 UBA52P62987 128 aaKnown RBP10.86□□□□□ -0.67
LIG1-212ENST00000596549 ACTG1P63261 375 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 CSNK2BP67870 215 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 OR8B8Q15620 311 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 GFOD2Q3B7J2 385 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 LRRN1Q6UXK5 716 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 RHOUQ7L0Q8 258 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 NLRC3Q7RTR2 1065 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 FAM90A1Q86YD7 464 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 C11orf53Q8IXP5 236 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 SIGLECL1Q8N7X8 197 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 BOLLQ8N9W6 283 aaKnown RBP10.86□□□□□ -0.67
LIG1-212ENST00000596549 PLPP7Q8NBV4 271 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 RAB40AQ8WXH6 277 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 UPRTQ96BW1 309 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 PLEKHA8Q96JA3 519 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 LYZL4Q96KX0 146 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 FGF23Q9GZV9 251 aaPredicted RBP10.86□□□□□ -0.67
LIG1-212ENST00000596549 YY1AP1Q9H869 796 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 ZNF556Q9HAH1 456 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 CLN8Q9UBY8 286 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 LRP12Q9Y561 859 aa10.86□□□□□ -0.67
LIG1-212ENST00000596549 SOX21Q9Y651 276 aaPredicted RBP10.86□□□□□ -0.67
LIG1-212ENST00000596549 TMEM89A2RUT3 159 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 OOEPA6NGQ2 149 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 DNAJC9-AS1A6NH13 148 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 A6NLC8 198 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.85□□□□□ -0.67
LIG1-212ENST00000596549 M0R129 80 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 HAX1O00165 279 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 LGALS8O00214 317 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 PPIAL4GP0DN37 164 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 ACKR3P25106 362 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 DDOSTP39656 456 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 COMPP49747 757 aaPredicted RBP10.85□□□□□ -0.67
LIG1-212ENST00000596549 GSK3AP49840 483 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 ELF3P78545 371 aaPredicted RBP10.85□□□□□ -0.67
LIG1-212ENST00000596549 APOFQ13790 326 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 SLC35D3Q5M8T2 416 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 BTNL3Q6UXE8 466 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 DOK3Q7L591 496 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 SPERTQ8NA61 448 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 OR8B12Q8NGG6 310 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 OR52H1Q8NGJ2 320 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 THEM6Q8WUY1 208 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 PGAM5Q96HS1 289 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 TECTBQ96PL2 329 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 JMJD8Q96S16 334 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 NUDT16L1Q9BRJ7 211 aaKnown RBP10.85□□□□□ -0.67
LIG1-212ENST00000596549 MMADHCQ9H3L0 296 aaPredicted RBP10.85□□□□□ -0.67
LIG1-212ENST00000596549 PAPOLBQ9NRJ5 636 aaKnown RBP10.85□□□□□ -0.67
LIG1-212ENST00000596549 KIF17Q9P2E2 1029 aa10.85□□□□□ -0.67
LIG1-212ENST00000596549 IGHV3OR15-7A0A075B7D8 119 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.84□□□□□ -0.67
LIG1-212ENST00000596549 KIR2DS1A0A191URI9 304 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 MDFIC2A0A1B0GVS7 189 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 A0A1B0GW55 424 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 hCG_1807616A0A1W2PRN6 198 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 ANKRD30BLA7E2S9 258 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 PRKYO43930 277 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 MITFO75030 526 aaPredicted RBP10.84□□□□□ -0.67
LIG1-212ENST00000596549 LHBP01229 141 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 APOC1P02654 83 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 GYPAP02724 150 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 HMGN1P05114 100 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 MRPL3P09001 348 aaKnown RBP10.84□□□□□ -0.67
LIG1-212ENST00000596549 DUX4L2P0CJ85 424 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 DUX4L3P0CJ86 424 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 DUX4L4P0CJ87 422 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 DUX4L5P0CJ88 424 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 DUX4L6P0CJ89 424 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 DUX4L7P0CJ90 424 aa10.84□□□□□ -0.67
LIG1-212ENST00000596549 ALOX5APP20292 161 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms