RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MTRF1O75570 445 aaKnown RBP17.55■□□□□ 0.4
VPS53-210ENST00000571456 ADRA2AP08913 450 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 CSF3P09919 207 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 TNFSF4P23510 183 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 CDKN1AP38936 164 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 ZNF81P51508 661 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 CCR9P51686 369 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 ZNF92Q03936 586 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 HLXQ14774 488 aaPredicted RBP17.55■□□□□ 0.4
VPS53-210ENST00000571456 RBM48Q5RL73 367 aaKnown RBP17.55■□□□□ 0.4
VPS53-210ENST00000571456 LAIR2Q6ISS4 152 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 LHFPL3Q86UP9 236 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 ELMOD2Q8IZ81 293 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 OR8B12Q8NGG6 310 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 SPRYD4Q8WW59 207 aaPredicted RBP17.55■□□□□ 0.4
VPS53-210ENST00000571456 CNBD2Q96M20 576 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 VRK1Q99986 396 aaPredicted RBP17.55■□□□□ 0.4
VPS53-210ENST00000571456 TTTY10Q9BZA0 68 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 ABCB9Q9NP78 766 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 BRD7Q9NPI1 651 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 MRPL15Q9P015 296 aaKnown RBP17.55■□□□□ 0.4
VPS53-210ENST00000571456 MYEF2Q9P2K5 600 aaKnown RBP17.55■□□□□ 0.4
VPS53-210ENST00000571456 OR52A1Q9UKL2 312 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 N6AMT1Q9Y5N5 214 aa17.55■□□□□ 0.4
VPS53-210ENST00000571456 DHRS7CA6NNS2 312 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 CD300LBA8K4G0 201 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 WIPF1O43516 503 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 LIMS3P0CW19 117 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 LIMS4P0CW20 117 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 ALDH3B1P43353 468 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 DSCR9P59020 149 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 MRPS11P82912 194 aaKnown RBP17.54■□□□□ 0.4
VPS53-210ENST00000571456 OR8B8Q15620 311 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 TP53I3Q53FA7 332 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 ZBTB37Q5TC79 503 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 CATSPERDQ86XM0 798 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 KLHL36Q8N4N3 616 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 OR52N1Q8NH53 320 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 RORBQ92753 470 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 C4orf36Q96KX1 117 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 ZNF649Q9BS31 505 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 EGLN1Q9GZT9 426 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 G6PC2Q9NQR9 355 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 ACOXLQ9NUZ1 547 aa17.54■□□□□ 0.4
VPS53-210ENST00000571456 hCG_38984A0A1B0GV85 526 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 A0A1B0GWJ7 208 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 HAX1O00165 279 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 XPNPEP2O43895 674 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 IGLV3-1P01715 115 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 CD55P08174 381 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 HTR1AP08908 422 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 UBCP0CG48 685 aaKnown RBP17.53■□□□□ 0.4
VPS53-210ENST00000571456 ZNF12P17014 697 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 TGM4P49221 684 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 GBX2P52951 348 aaPredicted RBP17.53■□□□□ 0.4
VPS53-210ENST00000571456 OR12D2P58182 307 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 FAM3AP98173 230 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 MZT1Q08AG7 82 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 CCDC58Q4VC31 144 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 OR2T2Q6IF00 324 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 AHSA2Q719I0 299 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 SPERTQ8NA61 448 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 OR2AE1Q8NHA4 323 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 SLC30A2Q9BRI3 323 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 YTHDF1Q9BYJ9 559 aaKnown RBP17.53■□□□□ 0.4
VPS53-210ENST00000571456 TMEM100Q9NV29 134 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 PCDHGB5Q9Y5G0 923 aa17.53■□□□□ 0.4
VPS53-210ENST00000571456 ANKRD30BLA7E2S9 258 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 J3QLW9 94 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 GMDSO60547 372 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 RPP14O95059 124 aaKnown RBP17.52■□□□□ 0.4
VPS53-210ENST00000571456 PNPP00491 289 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 TTRP02766 147 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 ZNF19P17023 458 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 MAP2K3P46734 347 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 SLC35A2P78381 396 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 KRTAP1-1Q07627 177 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 TMEM244Q5VVB8 128 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 KRT74Q7RTS7 529 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 PELI1Q96FA3 418 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 SORCS2Q96PQ0 1159 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 DUSP21Q9H596 190 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 ZNF319Q9P2F9 582 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 GTF2A1LQ9UNN4 478 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 ERGIC3Q9Y282 383 aa17.52■□□□□ 0.4
VPS53-210ENST00000571456 MYL12BO14950 172 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 MAGEB4O15481 346 aaPredicted RBP17.51■□□□□ 0.39
VPS53-210ENST00000571456 MRPS14O60783 128 aaKnown RBP17.51■□□□□ 0.39
VPS53-210ENST00000571456 IGHV4-39P01824 125 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 ISG15P05161 165 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 CDK1P06493 297 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 NAT2P11245 290 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 TNFRSF1AP19438 455 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 GSK3AP49840 483 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 MFGE8Q08431 387 aaPredicted RBP17.51■□□□□ 0.39
VPS53-210ENST00000571456 Q6ZSR3 168 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 DOK3Q7L591 496 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 CELF2-AS1Q8N7Q2 184 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 PLPP7Q8NBV4 271 aa17.51■□□□□ 0.39
VPS53-210ENST00000571456 OR2G2Q8NGZ5 317 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms