RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TRAV38-1A0A0B4J264 116 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 OOEPA6NGQ2 149 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 GNGT2O14610 69 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 ACOT8O14734 319 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 TNFRSF13BO14836 293 aaPredicted RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 XRCC2O43543 280 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 ENSAO43768 121 aaKnown RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 GLCEO94923 617 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 PTBP3O95758 552 aaKnown RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 FAM107AO95990 144 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 SFTPBP07988 381 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 PRKACGP22612 351 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 GRK5P34947 590 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 DDOSTP39656 456 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 ZNF121P58317 390 aaPredicted RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 GRB2P62993 217 aaKnown RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 ELF3P78545 371 aaPredicted RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 FAM3AP98173 230 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 GINS1Q14691 196 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 KCNJ8Q15842 424 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 DEFB112Q30KQ8 113 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 GFOD2Q3B7J2 385 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 RUSC1-AS1Q66K80 236 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 CD300LDQ6UXZ3 194 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 C9orf139Q6ZV77 190 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 C11orf53Q8IXP5 236 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 ADGRG5Q8IZF4 528 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 GCSAMQ8N6F7 178 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 PLPP7Q8NBV4 271 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 SGMS2Q8NHU3 365 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 THEM6Q8WUY1 208 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 CANT1Q8WVQ1 401 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 ZDHHC16Q969W1 377 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 SPSB4Q96A44 273 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 ASB9Q96DX5 294 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 ZMYND19Q96E35 227 aaPredicted RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 ZNF747Q9BV97 191 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 SMURF1Q9HCE7 757 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 C14orf119Q9NWQ9 140 aa8.49□□□□□ -1.05
LDLR-214ENST00000560628 PDP1Q9P0J1 537 aaPredicted RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 PRPF19Q9UMS4 504 aaKnown RBP8.49□□□□□ -1.05
LDLR-214ENST00000560628 HOXA3O43365 443 aaPredicted RBP8.48□□□□□ -1.05
LDLR-214ENST00000560628 SELENOFO60613 162 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 TOX4O94842 621 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 LHBP01229 141 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 RNASE1P07998 156 aaKnown RBP8.48□□□□□ -1.05
LDLR-214ENST00000560628 H2BFMP0C1H6 154 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 OMGP23515 440 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 CFHR2P36980 270 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 GSK3AP49840 483 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 NPY4RP50391 375 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 GMFBP60983 142 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 CSNK2BP67870 215 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 MZT1Q08AG7 82 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 KLHL12Q53G59 568 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 GPR157Q5UAW9 335 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 CD276Q5ZPR3 534 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 PLBD1Q6P4A8 553 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 SHFQ7M4L6 423 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 PRSS45Q7RTY3 260 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 WDR86Q86TI4 376 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 FAM90A1Q86YD7 464 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.48□□□□□ -1.05
LDLR-214ENST00000560628 TIGD4Q8IY51 512 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 HS3ST5Q8IZT8 346 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 FGFRL1Q8N441 504 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 LRRC29Q8WV35 223 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 RNF133Q8WVZ7 376 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 SEH1LQ96EE3 360 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 PGAM5Q96HS1 289 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 OR10A2Q9H208 303 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 TOR3AQ9H497 397 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 OPA3Q9H6K4 179 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 SP140LQ9H930 580 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 MARCH7Q9H992 704 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 UNKLQ9H9P5 680 aaKnown RBP8.48□□□□□ -1.05
LDLR-214ENST00000560628 RHBDD3Q9Y3P4 386 aa8.48□□□□□ -1.05
LDLR-214ENST00000560628 hCG_38984A0A1B0GV85 526 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 A0A1B0GW55 424 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 ZNF879B4DU55 563 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 PRR23D1E9PI22 279 aaPredicted RBP8.47□□□□□ -1.05
LDLR-214ENST00000560628 CLDN34H7C241 214 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DVL1O14640 695 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 TMPRSS2O15393 492 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 NDUFA2O43678 99 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 E2F6O75461 281 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 FCN3O75636 299 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 APOC1P02654 83 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 LIPFP07098 398 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DUX4L2P0CJ85 424 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DUX4L3P0CJ86 424 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DUX4L4P0CJ87 422 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DUX4L5P0CJ88 424 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DUX4L6P0CJ89 424 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 DUX4L7P0CJ90 424 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 PRR23D2P0DMB1 279 aaPredicted RBP8.47□□□□□ -1.05
LDLR-214ENST00000560628 PAICSP22234 425 aaKnown RBP8.47□□□□□ -1.05
LDLR-214ENST00000560628 OPRL1P41146 370 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 HCCSP53701 268 aa8.47□□□□□ -1.05
LDLR-214ENST00000560628 ARF6P62330 175 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms