RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 MAB21L1Q13394 359 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 SLC25A30Q5SVS4 291 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 OR2T27Q8NH04 317 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 PPP1R14AQ96A00 147 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 MSI2Q96DH6 328 aaKnown RBP12.46□□□□□ -0.41
USP4-212ENST00000486549 LYZL4Q96KX0 146 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 PBOV1Q9GZY1 135 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 SLC22A4Q9H015 551 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 RGCCQ9H4X1 137 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 UFSP2Q9NUQ7 469 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 MRM2Q9UI43 246 aaKnown RBP12.46□□□□□ -0.41
USP4-212ENST00000486549 NOP16Q9Y3C1 178 aaKnown RBP12.46□□□□□ -0.41
USP4-212ENST00000486549 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.45□□□□□ -0.424e-7■■■■■ 38.9
USP4-212ENST00000486549 A0A1B0GWJ7 208 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 SNTNA6NMZ2 147 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 SLC16A6O15403 523 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 MPZL2O60487 215 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 GMDSO60547 372 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 CLIC3O95833 236 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 CYB5R3P00387 301 aaPredicted RBP12.45□□□□□ -0.42
USP4-212ENST00000486549 DCTDP32321 178 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 GNALP38405 381 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 DDOSTP39656 456 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 CD200P41217 278 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 IL5RAQ01344 420 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 ZNF91Q05481 1191 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 BCL2L15Q5TBC7 163 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 PACRGLQ8N7B6 248 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 HPS1Q92902 700 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 FAM71F1Q96KD3 344 aaPredicted RBP12.45□□□□□ -0.42
USP4-212ENST00000486549 GAL3ST1Q99999 423 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 PAPOLGQ9BWT3 736 aaKnown RBP12.45□□□□□ -0.42
USP4-212ENST00000486549 DCLRE1BQ9H816 532 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 AMBNQ9NP70 447 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 C8orf4Q9NR00 106 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 UBAP1Q9NZ09 502 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 RHBDD3Q9Y3P4 386 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 NPTNQ9Y639 398 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 R4GMQ9 66 aa12.45□□□□□ -0.42
USP4-212ENST00000486549 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.44□□□□□ -0.42
USP4-212ENST00000486549 METTL15A6NJ78 407 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 ACOD1A6NK06 481 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 SRSF10O75494 262 aaKnown RBP12.44□□□□□ -0.42
USP4-212ENST00000486549 ZNF205O95201 554 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 PNPP00491 289 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 TGFAP01135 160 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 DBTP11182 482 aaKnown RBP12.44□□□□□ -0.42
USP4-212ENST00000486549 ACKR3P25106 362 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 ZNF85Q03923 595 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 OR8B8Q15620 311 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 MPPED2Q15777 294 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 TP53I3Q53FA7 332 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 OGFRL1Q5TC84 451 aaPredicted RBP12.44□□□□□ -0.42
USP4-212ENST00000486549 FAM166AQ6J272 317 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 FAM220AQ7Z4H9 259 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 CSNK2A3Q8NEV1 391 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 OR8S1Q8NH09 359 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 RHOXF1Q8NHV9 184 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 OR51E1Q8TCB6 317 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 APH1BQ8WW43 257 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 LGALS12Q96DT0 336 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 Q96MT0 163 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 SIGLEC11Q96RL6 698 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 PPP1R3EQ9H7J1 279 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 ZNF665Q9H7R5 613 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 MOB1AQ9H8S9 216 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 LPAR2Q9HBW0 351 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 GPR84Q9NQS5 396 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 TMEM160Q9NX00 188 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 LPAR3Q9UBY5 353 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 NKX1-2Q9UD57 310 aaPredicted RBP12.44□□□□□ -0.42
USP4-212ENST00000486549 NUFIP1Q9UHK0 495 aaKnown RBP12.44□□□□□ -0.42
USP4-212ENST00000486549 ZNF391Q9UJN7 358 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 GNG8Q9UK08 70 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 CDC42EP3Q9UKI2 254 aa12.44□□□□□ -0.42
USP4-212ENST00000486549 A0A0U1RQV5 110 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 DAPL1A0PJW8 107 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 LRRC30A6NM36 301 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 FAM157AC9JC47 383 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 TMEM178BH3BS89 294 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 CASQ2O14958 399 aaPredicted RBP12.43□□□□□ -0.42
USP4-212ENST00000486549 IGHV2-70P01814 119 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 GRPP07492 148 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 PMELP40967 661 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 GATA4P43694 442 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 CDH15P55291 814 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 LMO4P61968 165 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 BTG1P62324 171 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 ACTC1P68032 377 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 ACTA1P68133 377 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 ZMYND11Q15326 602 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 ODF4Q2M2E3 257 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 CHRFAM7AQ494W8 412 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 LIPNQ5VXI9 398 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 FTMTQ8N4E7 242 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 DHRSXQ8N5I4 330 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 CELF2-AS1Q8N7Q2 184 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 LINC01356Q8N9X3 169 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 OR11L1Q8NGX0 322 aa12.43□□□□□ -0.42
USP4-212ENST00000486549 G6PC2Q9NQR9 355 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms