RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 DHRS12A0PJE2 317 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 TMEM89A2RUT3 159 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 ACOT8O14734 319 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 ANOS1P23352 680 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 CFPP27918 469 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 PITPNBP48739 271 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 GRB2P62993 217 aaKnown RBP18.78■□□□□ 0.6
CLN3-215ENST00000565236 PAX2Q02962 417 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 EIF2B1Q14232 305 aaKnown RBP18.78■□□□□ 0.6
CLN3-215ENST00000565236 DCDC5Q6ZRR9 648 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 SIGLECL1Q8N7X8 197 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 SPERTQ8NA61 448 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 PLPP7Q8NBV4 271 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 MED20Q9H944 212 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 CLN8Q9UBY8 286 aa18.78■□□□□ 0.6
CLN3-215ENST00000565236 IGHV2-70DA0A0C4DH43 119 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 FAM183AA6NL82 134 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 XRCC2O43543 280 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 GRK5P34947 590 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 COMPP49747 757 aaPredicted RBP18.77■□□□□ 0.6
CLN3-215ENST00000565236 UBA52P62987 128 aaKnown RBP18.77■□□□□ 0.6
CLN3-215ENST00000565236 LINC01590Q5TEZ4 76 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 LYPD2Q6UXB3 125 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 DPY19L4Q7Z388 723 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 ERI1Q8IV48 349 aaKnown RBP18.77■□□□□ 0.6
CLN3-215ENST00000565236 ADGRG5Q8IZF4 528 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 IQCF1Q8N6M8 205 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 C3orf56Q8N813 242 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 BOLLQ8N9W6 283 aaKnown RBP18.77■□□□□ 0.6
CLN3-215ENST00000565236 C19orf18Q8NEA5 215 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 INTS14Q96SY0 518 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 MS4A7Q9GZW8 240 aaPredicted RBP18.77■□□□□ 0.6
CLN3-215ENST00000565236 SP140LQ9H930 580 aa18.77■□□□□ 0.6
CLN3-215ENST00000565236 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP18.76■□□□□ 0.59
CLN3-215ENST00000565236 ARRDC5A6NEK1 342 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 AQP12BA6NM10 295 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 TBX1O43435 398 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 APOC1P02654 83 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 ANXA2P07355 339 aaKnown RBP18.76■□□□□ 0.59
CLN3-215ENST00000565236 PPIAL4GP0DN37 164 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 PAICSP22234 425 aaKnown RBP18.76■□□□□ 0.59
CLN3-215ENST00000565236 POU1F1P28069 291 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 HSD11B1P28845 292 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 GSTT1P30711 240 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 DDOSTP39656 456 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 CX3CR1P49238 355 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 MZT1Q08AG7 82 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 KCNJ8Q15842 424 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 AQP12AQ8IXF9 295 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 BCL6BQ8N143 479 aaPredicted RBP18.76■□□□□ 0.59
CLN3-215ENST00000565236 OR56B2PQ8NGI1 322 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 OR6N2Q8NGY6 317 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 CANT1Q8WVQ1 401 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 ABHD6Q9BV23 337 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 TOR3AQ9H497 397 aa18.76■□□□□ 0.59
CLN3-215ENST00000565236 PDP1Q9P0J1 537 aaPredicted RBP18.76■□□□□ 0.59
CLN3-215ENST00000565236 KIR2DS1A0A191URI9 304 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 GLCEO94923 617 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 PTBP3O95758 552 aaKnown RBP18.75■□□□□ 0.59
CLN3-215ENST00000565236 GRPP07492 148 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 HOXB6P17509 224 aaKnown RBP18.75■□□□□ 0.59
CLN3-215ENST00000565236 TIGD6Q17RP2 521 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 WDR25Q64LD2 544 aaPredicted RBP18.75■□□□□ 0.59
CLN3-215ENST00000565236 DOK3Q7L591 496 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 SHFQ7M4L6 423 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 SPSB4Q96A44 273 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 NUDT16L1Q9BRJ7 211 aaKnown RBP18.75■□□□□ 0.59
CLN3-215ENST00000565236 OR51V1Q9H2C8 321 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 ZNF556Q9HAH1 456 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 C14orf119Q9NWQ9 140 aa18.75■□□□□ 0.59
CLN3-215ENST00000565236 ANKRD30BLA7E2S9 258 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 PHYHO14832 338 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 E2F6O75461 281 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 GINS1Q14691 196 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 OR8B8Q15620 311 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 TUSC1Q2TAM9 212 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 SFRP4Q6FHJ7 346 aaPredicted RBP18.74■□□□□ 0.59
CLN3-215ENST00000565236 TMEM179BQ7Z7N9 219 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 RNF133Q8WVZ7 376 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 MMADHCQ9H3L0 296 aaPredicted RBP18.74■□□□□ 0.59
CLN3-215ENST00000565236 MARCH7Q9H992 704 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 C1orf123Q9NWV4 160 aa18.74■□□□□ 0.59
CLN3-215ENST00000565236 IGHV3OR16-10A0A075B7F0 116 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 A6NLC8 198 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 LGALS8O00214 317 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 PSMB10P40306 273 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 HOXA4Q00056 320 aaPredicted RBP18.73■□□□□ 0.59
CLN3-215ENST00000565236 BAMBIQ13145 260 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 ZNF841Q6ZN19 808 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 FAM57BQ71RH2 274 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 RHOUQ7L0Q8 258 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 SLC16A9Q7RTY1 509 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 PARP8Q8N3A8 854 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 OR52H1Q8NGJ2 320 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 OR8S1Q8NH09 359 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 DACT3Q96B18 629 aaPredicted RBP18.73■□□□□ 0.59
CLN3-215ENST00000565236 SGK3Q96BR1 496 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 UPRTQ96BW1 309 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 REEP6Q96HR9 211 aa18.73■□□□□ 0.59
CLN3-215ENST00000565236 TRIM36Q9NQ86 728 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms