RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 MIDNQ504T8 468 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 TMEM128Q5BJH2 165 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 TDHQ8IZJ6 230 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 SLC38A9Q8NBW4 561 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 OR4A16Q8NH70 328 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 REEP6Q96HR9 211 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 VAMP8Q9BV40 100 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 JAM3Q9BX67 310 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 PARD6AQ9NPB6 346 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 KIR2DS1A0A191URI9 304 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 FGF17O60258 216 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 AVPR2P30518 371 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 KIR2DS4P43632 304 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 GRB2P62993 217 aaKnown RBP10.43□□□□□ -0.74
VPS39-201ENST00000318006 KIR2DS1Q14954 304 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 ZNF626Q68DY1 528 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 SLC16A14Q7RTX9 510 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 ZNF429Q86V71 674 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 FGF14Q92915 247 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 MIOXQ9UGB7 285 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 ACAD8Q9UKU7 415 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 IGLV3-16A0A075B6K0 115 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 TMEM218A2RU14 115 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 ANKUB1A6NFN9 424 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 ZNF749O43361 778 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 QDPRP09417 244 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 ARG2P78540 354 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 C9orf50Q5SZB4 431 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 PRAMEF20Q5VT98 475 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 DND1Q8IYX4 353 aaKnown RBP10.43□□□□□ -0.74
VPS39-201ENST00000318006 OR2G2Q8NGZ5 317 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 ZDHHC11Q9H8X9 412 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 RPH3ALQ9UNE2 315 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 V9GYH0 126 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 MCM3APO60318 1980 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 ARFGEF1Q9Y6D6 1849 aa10.43□□□□□ -0.74
VPS39-201ENST00000318006 MMP7P09237 267 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 RPA2P15927 270 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 CTRB1P17538 263 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 KCNJ3P48549 501 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 CLDN17P56750 224 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ELAVL1Q15717 326 aaKnown RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 DCAF12Q5T6F0 453 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 CTRB2Q6GPI1 263 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ZNF574Q6ZN55 896 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 MUC20Q8N307 709 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 SIRT6Q8N6T7 355 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ALG14Q96F25 216 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 PLA2G12AQ9BZM1 189 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 LYRM2Q9NU23 88 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 PLEKHB1Q9UF11 243 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 BOKQ9UMX3 212 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 ZNF320A2RRD8 509 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 HSPB6O14558 160 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 HSD17B6O14756 317 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 GLSO94925 669 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 GLI4P10075 376 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ST6GAL1P15907 406 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 TMEM201Q5SNT2 666 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ETFRF1Q6IPR1 90 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 S100A7AQ86SG5 101 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 GPX8Q8TED1 209 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ZNF845Q96IR2 970 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 WSB2Q9NYS7 404 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 A0A087X0M5 115 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 A0A1B0GX30 115 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 PRAMEF4O60810 478 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 GABRA1P14867 456 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 DTYMKP23919 212 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 GUCA2AQ02747 115 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 SLC10A1Q14973 349 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.42□□□□□ -0.74
VPS39-201ENST00000318006 ACOT6Q3I5F7 207 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 MAMSTRQ6ZN01 415 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 MSRB3Q8IXL7 192 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 DTWD2Q8NBA8 298 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ORAI1Q96D31 301 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ACTR3CQ9C0K3 210 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 NRSN2Q9GZP1 204 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 HEYLQ9NQ87 328 aaPredicted RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 SLC6A13Q9NSD5 602 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 FBXO4Q9UKT5 387 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 TCRBV16S1A1N1A0A5B0 115 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 TCAPO15273 167 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 SSSCA1O60232 199 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 IGHEP01854 428 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 GCH1P30793 250 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 NOVA1P51513 510 aaKnown RBP10.42□□□□□ -0.74
VPS39-201ENST00000318006 SSR4P51571 173 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 SLC17A1Q14916 467 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 C9orf152Q5JTZ5 239 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 FAM162BQ5T6X4 162 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 TOMM20LQ6UXN7 152 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 ZNF66Q6ZN08 573 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 THNSL2Q86YJ6 484 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 CMBLQ96DG6 245 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 UCK1Q9HA47 277 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 KIAA1217Q5T5P2 1943 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 MICAL3Q7RTP6 2002 aa10.42□□□□□ -0.74
VPS39-201ENST00000318006 CLDN34H7C241 214 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms