RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PRODHO43272 600 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 GLCEO94923 617 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 DBHP09172 617 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 PRR23D2P0DMB1 279 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-208ENST00000532560 PSKH1P11801 424 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 MPV17P39210 176 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 LSAMPQ13449 338 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 MOGQ16653 247 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 TEX30Q5JUR7 227 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 TMEM236Q5W0B7 351 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 ZCCHC24Q8N2G6 241 aaKnown RBP12.87□□□□□ -0.35
CPSF1-208ENST00000532560 ZNF511Q8NB15 262 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 TSPAN14Q8NG11 270 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 KLF14Q8TD94 323 aaPredicted RBP12.87□□□□□ -0.35
CPSF1-208ENST00000532560 C10orf105Q8TEF2 133 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 SNX33Q8WV41 574 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 PTP4A1Q93096 173 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 PLEKHA8Q96JA3 519 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 MAP6Q96JE9 813 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 COG8Q96MW5 612 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 CIB1Q99828 191 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 RHNO1Q9BSD3 238 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 OSBPL10Q9BXB5 764 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 REG4Q9BYZ8 158 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 PRRG3Q9BZD7 231 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 SEMA6AQ9H2E6 1030 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 TPK1Q9H3S4 243 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 MARCH7Q9H992 704 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 HINT3Q9NQE9 182 aaKnown RBP12.87□□□□□ -0.35
CPSF1-208ENST00000532560 DDX28Q9NUL7 540 aaKnown RBP12.87□□□□□ -0.35
CPSF1-208ENST00000532560 GRIP1Q9Y3R0 1128 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 C2CD3Q4AC94 2353 aa12.87□□□□□ -0.35
CPSF1-208ENST00000532560 A0A087WXM4 84 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 TRIM64CA6NLI5 447 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 H0YAE9 185 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 NDUFS8O00217 210 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 MITFO75030 526 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-208ENST00000532560 SLC25A16P16260 332 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 IGFBP5P24593 272 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 RPS27P42677 84 aaKnown RBP12.86□□□□□ -0.35
CPSF1-208ENST00000532560 PDLIM4P50479 330 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 PPP2R2BQ00005 443 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 PTGES3Q15185 160 aaKnown RBP12.86□□□□□ -0.35
CPSF1-208ENST00000532560 TMEM255AQ5JRV8 349 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 PLBD1Q6P4A8 553 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 OR10S1Q8NGN2 331 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 OTULINQ96BN8 352 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 INTS14Q96SY0 518 aa12.86□□□□□ -0.35
CPSF1-208ENST00000532560 CGGBP1Q9UFW8 167 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-208ENST00000532560 TMEFF2Q9UIK5 374 aaPredicted RBP12.86□□□□□ -0.35
CPSF1-208ENST00000532560 A0A096LNT2 108 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 LOC390937A0A1W2PQ73 354 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 SAC3D1A6NKF1 404 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 ZAR1LA6NP61 321 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 C17orf100A8MU93 164 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 RNF223E7ERA6 249 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 ZNF701M0R085 212 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 ZNF593O00488 134 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 SMAD7O15105 426 aaKnown RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 MT-ND5P03915 603 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 SPARCP09486 303 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 NAT2P11245 290 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 DAOP14920 347 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 OTX1P32242 354 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 ALDH3B2P48448 385 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 SNAPC1Q16533 368 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 RSPO1Q2MKA7 263 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 ALKBH6Q3KRA9 238 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 SLC35D3Q5M8T2 416 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 SLX4IPQ5VYV7 408 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 COLCA1Q6ZS62 124 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 CXXC5Q7LFL8 322 aaKnown RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 DCXRQ7Z4W1 244 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 SATL1Q86VE3 508 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 CPOQ8IVL8 374 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 CBR4Q8N4T8 237 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 OR5L1Q8NGL2 311 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 APOBEC3DQ96AK3 386 aaPredicted RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 SLC29A1Q99808 456 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 RBM4BQ9BQ04 359 aaKnown RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 ADI1Q9BV57 179 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 C1QTNF5Q9BXJ0 243 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 GABARAPL3Q9BY60 117 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 RBM38Q9H0Z9 239 aaKnown RBP12.85□□□□□ -0.35
CPSF1-208ENST00000532560 OR51V1Q9H2C8 321 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 POFUT1Q9H488 388 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 STARD10Q9Y365 291 aa12.85□□□□□ -0.35
CPSF1-208ENST00000532560 CHD3Q12873 2000 aaKnown RBP12.84□□□□□ -0.35
CPSF1-208ENST00000532560 F5H5K5 113 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 NCR1O76036 304 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 ACSM4P0C7M7 580 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 SLC2A5P22732 501 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 EPHA2P29317 976 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 MMP15P51511 669 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 MRPS11P82912 194 aaKnown RBP12.84□□□□□ -0.35
CPSF1-208ENST00000532560 PCGF3Q3KNV8 242 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 FBXW12Q6X9E4 464 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 ERI1Q8IV48 349 aaKnown RBP12.84□□□□□ -0.35
CPSF1-208ENST00000532560 TIGD4Q8IY51 512 aa12.84□□□□□ -0.35
CPSF1-208ENST00000532560 ZNF786Q8N393 782 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms