RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NRGNQ92686 78 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF799Q96GE5 643 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 MNTQ99583 582 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 KCNJ15Q99712 375 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 ELOVL3Q9HB03 270 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 FGF20Q9NP95 211 aaPredicted RBP12.74□□□□□ -0.37
COL9A3-209ENST00000469852 FKBP14Q9NWM8 211 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 TMEM14AQ9Y6G1 99 aa12.74□□□□□ -0.37
COL9A3-209ENST00000469852 ICMTO60725 284 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 ABHD16AO95870 558 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 PCSK6P29122 969 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 SSTR2P30874 369 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 CX3CR1P49238 355 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 UCP2P55851 309 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 TAF13Q15543 124 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 SNAI3Q3KNW1 292 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 TP53I3Q53FA7 332 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 KLHL22Q53GT1 634 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 TMEM255AQ5JRV8 349 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 SPATA46Q5T0L3 261 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 AHSA2Q719I0 299 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 PRSS45Q7RTY3 260 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 LHFPL3Q86UP9 236 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF679Q8IYX0 411 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 ACBD7Q8N6N7 88 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 NUP37Q8NFH4 326 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 ABHD4Q8TB40 342 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 TMEM171Q8WVE6 324 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 ASB17Q8WXJ9 295 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 C1QTNF5Q9BXJ0 243 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 LIME1Q9H400 295 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 UBTD1Q9HAC8 227 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 CA10Q9NS85 328 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 CISD1Q9NZ45 108 aaKnown RBP12.73□□□□□ -0.37
COL9A3-209ENST00000469852 IKZF2Q9UKS7 526 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 FZR1Q9UM11 496 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 STARD10Q9Y365 291 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 AKAP6Q13023 2319 aa12.73□□□□□ -0.37
COL9A3-209ENST00000469852 TEP1Q99973 2627 aaKnown RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 DAPL1A0PJW8 107 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 HS3ST1O14792 307 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 PHYHO14832 338 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 SRSF10O75494 262 aaKnown RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 FADS2O95864 444 aaKnown RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 LIMS3P0CW19 117 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 LIMS4P0CW20 117 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 PIPP12273 146 aaPredicted RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 HSD11B1P28845 292 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 SLC6A9P48067 706 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ETV1P50549 477 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 TPTEP56180 551 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 PRSS12P56730 875 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 GRB2P62993 217 aaKnown RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ACTC1P68032 377 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ACTA1P68133 377 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 MFGE8Q08431 387 aaPredicted RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ST3GAL4Q11206 333 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ADIPOQQ15848 244 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 KCTD18Q6PI47 426 aaPredicted RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 COLCA1Q6ZS62 124 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 RHOUQ7L0Q8 258 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 LRP11Q86VZ4 500 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF283Q8N7M2 679 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF540Q8NDQ6 660 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 OR1J1Q8NGS3 322 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 SPTSSAQ969W0 71 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 RNF166Q96A37 237 aaPredicted RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 DCLRE1CQ96SD1 692 aaKnown RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 DOK1Q99704 481 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ISG20L2Q9H9L3 353 aaKnown RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 BRD7Q9NPI1 651 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ERVK13-1Q9NX77 482 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF319Q9P2F9 582 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 DIMT1Q9UNQ2 313 aaKnown RBP12.72□□□□□ -0.37
COL9A3-209ENST00000469852 N6AMT1Q9Y5N5 214 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 CSMD2Q7Z408 3487 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 POLQO75417 2590 aa12.72□□□□□ -0.37
COL9A3-209ENST00000469852 EFCAB10A6NFE3 127 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 PNPP00491 289 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 LCKP06239 509 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 C21orf33P30042 268 aaPredicted RBP12.71□□□□□ -0.37
COL9A3-209ENST00000469852 MPV17P39210 176 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 OR12D2P58182 307 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF121P58317 390 aaPredicted RBP12.71□□□□□ -0.37
COL9A3-209ENST00000469852 PPP1CBP62140 327 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 EGR3Q06889 387 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 DOC2BQ14184 412 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 GALEQ14376 348 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 CDONQ4KMG0 1287 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 DEGS2Q6QHC5 323 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 DRAM2Q6UX65 266 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.71□□□□□ -0.37
COL9A3-209ENST00000469852 ZNF786Q8N393 782 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 SLC25A40Q8TBP6 338 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 FBXW5Q969U6 566 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 PPP1R14AQ96A00 147 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 MARS2Q96GW9 593 aaKnown RBP12.71□□□□□ -0.37
COL9A3-209ENST00000469852 TMEM80Q96HE8 168 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 DHRS9Q9BPW9 319 aa12.71□□□□□ -0.37
COL9A3-209ENST00000469852 ALG8Q9BVK2 526 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms