RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 DEFA1P59665 94 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 DEFA3P59666 94 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 PPIAP62937 165 aaKnown RBP12.61□□□□□ -0.39
C9orf3-202ENST00000297979 PYDC2Q56P42 97 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 MZT2BQ6NZ67 158 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 KLHL24Q6TFL4 600 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 FCRLAQ7L513 359 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 LINC00518Q8N0U6 118 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF433Q8N7K0 673 aaPredicted RBP12.61□□□□□ -0.39
C9orf3-202ENST00000297979 GFI1Q99684 422 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 NELFAQ9H3P2 528 aa12.61□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF292O60281 2723 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 SLC43A1O75387 559 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 MSR1P21757 451 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 MMP16P51512 607 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 CCL11P51671 97 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 LSM6P62312 80 aaKnown RBP12.6□□□□□ -0.39
C9orf3-202ENST00000297979 CLN3Q13286 438 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 RHOUQ7L0Q8 258 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.6□□□□□ -0.39
C9orf3-202ENST00000297979 TMEM178AQ8NBL3 297 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 ENKURQ8TC29 256 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF775Q96BV0 537 aaPredicted RBP12.6□□□□□ -0.39
C9orf3-202ENST00000297979 V9GY05 133 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 DMXL1Q9Y485 3027 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF708P17019 499 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 MADCAM1Q13477 382 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 IL18Q14116 193 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 BAK1Q16611 211 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 BCL2L15Q5TBC7 163 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 PXDC1Q5TGL8 231 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 AAED1Q7RTV5 226 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 MEIOBQ8N635 442 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 PPP1R3EQ9H7J1 279 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 BRD7Q9NPI1 651 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 CYSLTR2Q9NS75 346 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 FAM206AQ9NX38 181 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 EXTL2Q9UBQ6 330 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 DHDHQ9UQ10 334 aa12.6□□□□□ -0.39
C9orf3-202ENST00000297979 FUOMA2VDF0 154 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 IFITM5A6NNB3 132 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 ACOT7O00154 380 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 AIPO00170 330 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 ISG15P05161 165 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 EIF4EP06730 217 aaKnown RBP12.59□□□□□ -0.39
C9orf3-202ENST00000297979 IL7P13232 177 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 SNRPBP14678 240 aaKnown RBP12.59□□□□□ -0.39
C9orf3-202ENST00000297979 NPR2P20594 1047 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 TALDO1P37837 337 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF84P51523 738 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 SRYQ05066 204 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 LRRTM1Q86UE6 522 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 FAM109AQ8N4B1 249 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 FDCSPQ8NFU4 85 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF416Q9BWM5 594 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 RBM24Q9BX46 236 aaKnown RBP12.59□□□□□ -0.39
C9orf3-202ENST00000297979 TRAV8-7A0A075B6U6 113 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF891A8MT65 544 aaPredicted RBP12.59□□□□□ -0.39
C9orf3-202ENST00000297979 SHOXO15266 292 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 PTTG1O95997 202 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 ACHEP22303 614 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 HSD11B1P28845 292 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 TNFSF10P50591 281 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 RIN1Q13671 783 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 COTL1Q14019 142 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 KCNJ8Q15842 424 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 ZNF671Q8TAW3 534 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 ABHD3Q8WU67 409 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 NABP1Q96AH0 204 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 NIPAL2Q9H841 368 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 HHLA2Q9UM44 414 aa12.59□□□□□ -0.39
C9orf3-202ENST00000297979 CNOT1A5YKK6 2376 aaKnown RBP12.59□□□□□ -0.39
C9orf3-202ENST00000297979 RER1O15258 196 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 TSC22D2O75157 780 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 UBCP0CG48 685 aaKnown RBP12.58□□□□□ -0.4
C9orf3-202ENST00000297979 ADRA2CP18825 462 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 SLC10A1Q14973 349 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 P2RY14Q15391 338 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 TAF13Q15543 124 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 HES5Q5TA89 166 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 STX12Q86Y82 276 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 OR5H6Q8NGV6 325 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 ASB5Q8WWX0 329 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 RADILQ96JH8 1075 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 ACKR4Q9NPB9 350 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 PNRC2Q9NPJ4 139 aaKnown RBP12.58□□□□□ -0.4
C9orf3-202ENST00000297979 SPATA2Q9UM82 520 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 CBY1Q9Y3M2 126 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 LOC107986453A0A1B0GWG9 222 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 RRP8O43159 456 aaKnown RBP12.58□□□□□ -0.4
C9orf3-202ENST00000297979 SMPD2O60906 423 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 CD2P06729 351 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 CSF3P09919 207 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 NTF4P34130 210 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 PSMA6P60900 246 aaKnown RBP12.58□□□□□ -0.4
C9orf3-202ENST00000297979 TMEM244Q5VVB8 128 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 IDO2Q6ZQW0 420 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 OR4M1Q8NGD0 313 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 SETD6Q8TBK2 473 aa12.58□□□□□ -0.4
C9orf3-202ENST00000297979 PHF3Q92576 2039 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms