RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SSR3Q9UNL2 185 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 CEPT1Q9Y6K0 416 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 SVILO95425 2214 aa13.33□□□□□ -0.27
TRIM28-209ENST00000597423 ATMQ13315 3056 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 TMEM212A6NML5 194 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 PRR32B1ATL7 298 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 E9PI62 339 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 LOC110117498-PIK3R3F6TDL0 507 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 AIREO43918 545 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 RAD51DO75771 328 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 LYZL6O75951 148 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 LALBAP00709 142 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 HLA-HP01893 362 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 MMP7P09237 267 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-209ENST00000597423 GALP22466 123 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 CHRNB4P30926 498 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 GTF2A1P52655 376 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-209ENST00000597423 SLC3A1Q07837 685 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 CDK5R1Q15078 307 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 GSG1Q2KHT4 349 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 HIKESHIQ53FT3 197 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 PABPC1L2AQ5JQF8 200 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 PAMR1Q6UXH9 720 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF704Q6ZNC4 412 aaPredicted RBP13.33□□□□□ -0.28
TRIM28-209ENST00000597423 LUZP2Q86TE4 346 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF283Q8N7M2 679 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 ZFP41Q8N8Y5 198 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 OR2G2Q8NGZ5 317 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 OR5AK2Q8NH90 309 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 THRSPQ92748 146 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 GHSRQ92847 366 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 SMIM19Q96E16 107 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 DCLRE1CQ96SD1 692 aaKnown RBP13.33□□□□□ -0.28
TRIM28-209ENST00000597423 PNRC2Q9NPJ4 139 aaKnown RBP13.33□□□□□ -0.28
TRIM28-209ENST00000597423 RSL24D1Q9UHA3 163 aaKnown RBP13.33□□□□□ -0.28
TRIM28-209ENST00000597423 ST6GALNAC2Q9UJ37 374 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 STUB1Q9UNE7 303 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 GTF2A1LQ9UNN4 478 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 GSTK1Q9Y2Q3 226 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 AMDHD2Q9Y303 409 aa13.33□□□□□ -0.28
TRIM28-209ENST00000597423 ZZEF1O43149 2961 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 PNMA8CA0A1B0GUJ8 204 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 F5H5K5 113 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 SYNGR3O43761 229 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 PATE4P0C8F1 98 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 PSMB1P20618 241 aaKnown RBP13.32□□□□□ -0.28
TRIM28-209ENST00000597423 HTR5AP47898 357 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 GDI2P50395 445 aaKnown RBP13.32□□□□□ -0.28
TRIM28-209ENST00000597423 GALK2Q01415 458 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 MRPL49Q13405 166 aaKnown RBP13.32□□□□□ -0.28
TRIM28-209ENST00000597423 SSX1Q16384 188 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 SLC25A35Q3KQZ1 300 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 YIF1BQ5BJH7 314 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 BCL2L15Q5TBC7 163 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF774Q6NX45 483 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF474Q6S9Z5 364 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-209ENST00000597423 DRAM2Q6UX65 266 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF676Q8N7Q3 588 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 OR10S1Q8NGN2 331 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 OR1J2Q8NGS2 313 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 AKR7LQ8NHP1 331 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 MUCL1Q96DR8 90 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 WNT5BQ9H1J7 359 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 SLC17A5Q9NRA2 495 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 FRRS1LQ9P0K9 344 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 ENPP5Q9UJA9 477 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 ERRFI1Q9UJM3 462 aaPredicted RBP13.32□□□□□ -0.28
TRIM28-209ENST00000597423 OR52A1Q9UKL2 312 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 ZNF281Q9Y2X9 895 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 GRIP1Q9Y3R0 1128 aa13.32□□□□□ -0.28
TRIM28-209ENST00000597423 B8ZZF3 427 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 CBR1P16152 277 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 GADD45AP24522 165 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 APLNRP35414 380 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 TGFBR2P37173 567 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 CX3CR1P49238 355 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 PRKXP51817 358 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 PSMA6P60900 246 aaKnown RBP13.31□□□□□ -0.28
TRIM28-209ENST00000597423 TIMM23BQ5SRD1 257 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 TMEM244Q5VVB8 128 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 CATSPERDQ86XM0 798 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 ABHD4Q8TB40 342 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 PHYHIPQ92561 330 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 TMEM203Q969S6 136 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 C4orf45Q96LM5 186 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 TMED9Q9BVK6 235 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 OR10A4Q9H209 315 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 EXOSC4Q9NPD3 245 aaKnown RBP13.31□□□□□ -0.28
TRIM28-209ENST00000597423 B3GNT2Q9NY97 397 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 JKAMPQ9P055 326 aa13.31□□□□□ -0.28
TRIM28-209ENST00000597423 SIRT4Q9Y6E7 314 aaPredicted RBP13.31□□□□□ -0.28
TRIM28-209ENST00000597423 MED12LQ86YW9 2145 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 BOD1L1Q8NFC6 3051 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 TRDV1A0A1B0GX56 115 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 OR5H1A6NKK0 313 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 C16orf97H3BN30 126 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 M0R135 149 aa13.3□□□□□ -0.28
TRIM28-209ENST00000597423 GATBO75879 557 aaKnown RBP13.3□□□□□ -0.28
TRIM28-209ENST00000597423 RGS9O75916 674 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-209ENST00000597423 SERPINA5P05154 406 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms