RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 KCTD18Q6PI47 426 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-209ENST00000553949 SLC22A25Q6T423 547 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 ZNF322Q6U7Q0 402 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-209ENST00000553949 SSX6Q7RTT6 188 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 ZNF295-AS1Q8N0V1 137 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 ACBD7Q8N6N7 88 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 KBTBD8Q8NFY9 601 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 GGHQ92820 318 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 SPTSSAQ969W0 71 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 MARVELD3Q96A59 401 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 C14orf79Q96F83 325 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 KCNJ15Q99712 375 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 RHNO1Q9BSD3 238 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 TTTY10Q9BZA0 68 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 FGF20Q9NP95 211 aaPredicted RBP10.59□□□□□ -0.71
SHMT2-209ENST00000553949 UBAP1Q9NZ09 502 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 CNOT2Q9NZN8 540 aaKnown RBP10.59□□□□□ -0.71
SHMT2-209ENST00000553949 PSORS1C1Q9UIG5 152 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 MYRFQ9Y2G1 1151 aa10.59□□□□□ -0.71
SHMT2-209ENST00000553949 PRR14LQ5THK1 2151 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 DAPL1A0PJW8 107 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 EFCAB10A6NFE3 127 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 SHISA9B4DS77 424 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 PSMD9O00233 223 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 SLC1A7O00341 560 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 PLAUP00749 431 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 IGHA1P01876 353 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 H2BFMP0C1H6 154 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 PIPP12273 146 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-209ENST00000553949 PCSK6P29122 969 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 WNT5AP41221 380 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 GRB2P62993 217 aaKnown RBP10.58□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF85Q03923 595 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 HGFACQ04756 655 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 EGR3Q06889 387 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 MED21Q13503 144 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF787Q6DD87 383 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 LRRN1Q6UXK5 716 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF704Q6ZNC4 412 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-209ENST00000553949 KRT77Q7Z794 578 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF679Q8IYX0 411 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 IPCEF1Q8WWN9 437 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-209ENST00000553949 C4orf45Q96LM5 186 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 OR8B4Q96RC9 309 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 DCLRE1CQ96SD1 692 aaKnown RBP10.58□□□□□ -0.72
SHMT2-209ENST00000553949 MROQ9BYG7 248 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 ELOVL3Q9HB03 270 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 INPP5EQ9NRR6 644 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 SCN3BQ9NY72 215 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 SLCO1C1Q9NYB5 712 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 EIF3KQ9UBQ5 218 aaKnown RBP10.58□□□□□ -0.72
SHMT2-209ENST00000553949 IKZF2Q9UKS7 526 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 DIMT1Q9UNQ2 313 aaKnown RBP10.58□□□□□ -0.72
SHMT2-209ENST00000553949 GRIP1Q9Y3R0 1128 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 SPEF1Q9Y4P9 236 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 LRRC42Q9Y546 428 aa10.58□□□□□ -0.72
SHMT2-209ENST00000553949 A0A1W2PPR1 153 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 M0R135 149 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 MAGEB4O15481 346 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ICMTO60725 284 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF254O75437 659 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ABHD16AO95870 558 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ADRA2AP08913 450 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 CCDC159P0C7I6 412 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ACSM4P0C7M7 580 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 FAM157BP0CG42 384 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 NR4A1P22736 598 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 DCKP27707 260 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 HSD11B1P28845 292 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 OTX1P32242 354 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-209ENST00000553949 CX3CR1P49238 355 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 UCP2P55851 309 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 TPTEP56180 551 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 TLE4Q04727 773 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ST3GAL4Q11206 333 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 SNTB2Q13425 540 aaKnown RBP10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF684Q5T5D7 378 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 DEGS2Q6QHC5 323 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ARL9Q6T311 187 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 AHSA2Q719I0 299 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF786Q8N393 782 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF540Q8NDQ6 660 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 NUP37Q8NFH4 326 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 LILRB1Q8NHL6 650 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-209ENST00000553949 SNX33Q8WV41 574 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 NEUROG1Q92886 237 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ZNF799Q96GE5 643 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 TMEM80Q96HE8 168 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 JAM3Q9BX67 310 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 CLEC4MQ9H2X3 399 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-209ENST00000553949 OR51B6Q9H340 312 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 FKBP14Q9NWM8 211 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ERVK13-1Q9NX77 482 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 MRM2Q9UI43 246 aaKnown RBP10.57□□□□□ -0.72
SHMT2-209ENST00000553949 POU2F3Q9UKI9 436 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 LRP12Q9Y561 859 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 ATP23Q9Y6H3 246 aa10.57□□□□□ -0.72
SHMT2-209ENST00000553949 PTGES3LE9PB15 166 aa10.56□□□□□ -0.72
SHMT2-209ENST00000553949 SMPD2O60906 423 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms